CK932924

Overview
NameCK932924
Unique NameCK932924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:272..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.122e-46
Identity = 88/97 (90.72%), Postives = 95/97 (97.94%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.265e-46
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.265e-46
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.274e-46
Identity = 86/97 (88.66%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   63 IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.610e-45
Identity = 84/97 (86.60%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MGEEQICALKDIGPK
Sbjct:   63 IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.715e-45
Identity = 85/97 (87.63%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MGEE+IC+LKDIGPK
Sbjct:   63 IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 8.042e-45
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 8.042e-45
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.372e-44
Identity = 85/97 (87.63%), Postives = 95/97 (97.94%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
[Close]
BLAST of CK932924 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.213e-44
Identity = 85/97 (87.63%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 IDIFSGKKQKDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 291
            IDIF+GKK +DIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDE LL+ +KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:   63 IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
The following BLAST results are available for this feature:
BLAST of CK932924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
IF5A2_NICPL1.122e-4690.72Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A5_SOLTU3.265e-4689.69Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC3.265e-4689.69Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_SENVE7.274e-4688.66Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A2_MEDSA3.610e-4586.60Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A_MANES4.715e-4587.63Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A1_TOBAC8.042e-4586.60Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL8.042e-4586.60Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLTU1.372e-4487.63Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLLC5.213e-4487.63Eukaryotic translation initiation factor 5A-3 OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_G11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932924 ID=CK932924; Name=CK932924; organism=Citrus sinensis; type=EST; length=291bp
ATTGATATCTTCAGTGGAAAGAAGCAAAAAGATATTGTCCCCTCTTCTCA
TAACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATA
TTTCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAG
GATGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGA
CGGTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGG
GCGAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCCAAAG
back to top