CK932925

Overview
NameCK932925
Unique NameCK932925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.084e-32
Identity = 66/83 (79.52%), Postives = 76/83 (91.57%), Query Frame = 3
Query:    6 RGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRS 254
            RG+  GIAATANWI NLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV++ VPETKG+P+EEIEKMLE R++ FKFW+K+S
Sbjct:  488 RGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVMVCVPETKGMPMEEIEKMLERRSMEFKFWKKKS 570          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.841e-17
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    6 RGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLEL 218
            RG+  GIAA +NW+ NLIV++SFLSLT A+G+S TFL+F   S   L F+ + VPETKGL  EE+EK+LE+
Sbjct:  492 RGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFFIWLLVPETKGLQFEEVEKLLEV 562          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.142e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 3
Query:    6 RGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 215
            RG++ GIAA +NW+ NL+V+++FL+LT A+G+S TFL+F   S   L F+ + VPETKGL  EE+EK+LE
Sbjct:  491 RGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEKLLE 560          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.103e-16
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    6 RGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRA 224
            RG+  G++AT NWI NLIVAQ+FL++ +A GT  TFLI   I+V A++FV++FVPET+GL   E+E++ + RA
Sbjct:  411 RGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERA 483          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR10_XENTR (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.107e-12
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRAL 227
            +RG +     + NW  NL++  +FL +  +IG SWTFL++GV+ + A+ F+  F+PETKG  +EEI+K    + +
Sbjct:  452 IRGRAFAFCNSFNWAANLLITLTFLDVIASIGLSWTFLLYGVVGLLAIAFIYFFIPETKGQSLEEIDKQFSTKRI 526          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.694e-12
Identity = 31/74 (41.89%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRA 224
            ++G +  I ++ NW  NL+++ +FL+LT+ IG  W    + ++S+A+L+FV++FVP TKG P+EEI K L  R+
Sbjct:  489 IKGRAFAITSSMNWGMNLLISLTFLTLTEMIGLPWMLFGYALMSIASLVFVIMFVPNTKGRPLEEISKELANRS 562          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR10_HUMAN (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.131e-12
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRS 254
            +RG +     + NW  NL ++ SFL L   IG SWTFL++G+ +V  L F+ +FVPETKG  + EI++  + R     F  +++
Sbjct:  443 IRGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQSLAEIDQQFQKRRFTLSFGHRQN 526          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR10_MOUSE (Solute carrier family 2, facilitated glucose transporter member 10 OS=Mus musculus GN=Slc2a10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.008e-12
Identity = 31/85 (36.47%), Postives = 50/85 (58.82%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSL 257
            +RG +    ++ NW  NL ++ SFL L  AIG +WTFL++G+ +V  L F+ + VPETKG  + EIE+  +       F  ++ +
Sbjct:  439 IRGRAFAFCSSFNWAANLFISLSFLDLIGAIGLAWTFLLYGLTAVLGLAFIYLLVPETKGQSLAEIEQQFQTSRFPLNFGHRQRI 523          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRAL 227
            +RG +     + NW  NL++  +FL +  +IG  WTFL++G + + A+ F+  F+PETKG  +EEI++ L  + +
Sbjct:  450 IRGRAFAFCNSFNWAANLLITLTFLEVIGSIGLGWTFLLYGGVGLLAIAFIYFFIPETKGQSLEEIDQQLSSKRI 524          
BLAST of CK932925 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.853e-11
Identity = 27/66 (40.91%), Postives = 48/66 (72.73%), Query Frame = 3
Query:    3 VRGVS*GIAATANWIXNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEI 200
            +RG +  + ++ NW  NL+++ +FL++T  IG SW   I+ ++S+A+L FV++F+PETKG  +E+I
Sbjct:  500 IRGRAMALTSSMNWGVNLLISLTFLTVTDLIGLSWVCFIYTIMSLASLAFVVLFIPETKGCSLEQI 565          
The following BLAST results are available for this feature:
BLAST of CK932925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
INT2_ARATH4.084e-3279.52Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT4_ARATH2.841e-1757.75Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH3.142e-1654.29Probable inositol transporter 3 OS=Arabidopsis tha... [more]
INT1_ARATH4.103e-1653.42Probable inositol transporter 1 OS=Arabidopsis tha... [more]
GTR10_XENTR2.107e-1238.67Solute carrier family 2, facilitated glucose trans... [more]
GTR12_XENLA4.694e-1241.89Solute carrier family 2, facilitated glucose trans... [more]
GTR10_HUMAN6.131e-1238.10Solute carrier family 2, facilitated glucose trans... [more]
GTR10_MOUSE8.008e-1236.47Solute carrier family 2, facilitated glucose trans... [more]
GTR10_XENLA6.779e-1136.00Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MOUSE8.853e-1140.91Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932925 ID=CK932925; Name=CK932925; organism=Citrus sinensis; type=EST; length=448bp
GGGTCCGAGGGGTATCTTGAGGAATAGCCGCCACTGCAAACTGGATANNN
AACCTCATCGTGGCACAATCCTTCCTATCTTTGACACAGGCAATCGGAAC
ATCCTGGACATTTCTGATATTTGGTGTAATTTCTGTTGCAGCCTTGCTCT
TTGTACTGATTTTTGTTCCGGAAACTAAGGGACTTCCCATTGAGGAAATT
GAAAAGATGCTGGAGCTAAGAGCTCTGCATTTCAAGTTCTGGGAGAAGAG
ATCCCTACCGGACAAGAGCCAATCTGTGTGATATATATTTTTTTTTCAGA
AGTTTTATAAGCAGAAATCTCAATAGCAAATCCTGGATATTGTTCAGTGG
AGTTCCTTAGAGATGTAATATTCTGTACCTGGGAAAGGCCTCCTAATAAA
ATAAAAGTATTCAAGACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top