CK932927
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33 Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 1 Query: 22 NYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPL-PLASNAEN 327 NY+EL+AELD+LFEF+GELMAPKK+W+IVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN + S + E+ + G+G DAK+ K P S+A N Sbjct: 756 NYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.021e-28 Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1 Query: 22 NYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 327 NYDEL AELD++FEFDGEL++ KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS N G LP+ + ++N Sbjct: 715 NYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27 Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 1 Query: 25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDS 255 YDELIAELDQ+F+F+GEL + KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN + +S+ EDS Sbjct: 737 YDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27 Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1 Query: 25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 327 Y+ELIAELD +F+F+GEL PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN + +S+ EDS N G +E++ L +S N+EN Sbjct: 749 YEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27 Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1 Query: 25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNG--DGIDAKEVKQPLPLAS-NAEN 327 Y+ELIAELD +F+F+GEL PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN + +S+ EDS N G +E++ L +S N+EN Sbjct: 749 YEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20 Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVS 231 L +YDELI EL+++FE +GEL +PK W IV+TDDEGD MLVGDDPW EFC M +K+FIY +EV KM S S Sbjct: 532 LRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKS 602
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.080e-20 Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 1 Query: 16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS---VSFSSKGED 252 L +YDELI EL+++FE G+L+A K WI+V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM + +S S + E+ Sbjct: 510 LKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEE 590
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.635e-20 Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1 Query: 25 YDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 222 Y++L +L+++F+ GEL+ K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++ Sbjct: 566 YEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19 Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 Query: 16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQ 297 L+ YD+L +L+++F+ GEL A K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE ++ S P+ GD I KQ Sbjct: 569 LHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656
BLAST of CK932927 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.787e-18 Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 16 LYNYDELIAELDQLFEFDGELMAPKKNWIIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSFSSKGEDSPMNGDGIDAKEVKQPLPLASNAEN 327 L Y+ELI ++++LF+ GEL + + W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM +P N + +EV+ L S +N Sbjct: 544 LKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635 The following BLAST results are available for this feature:
BLAST of CK932927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932927 ID=CK932927; Name=CK932927; organism=Citrus sinensis; type=EST; length=753bpback to top |