CK932938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP42_ARATH (Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.658e-40 Identity = 57/97 (58.76%), Postives = 64/97 (65.98%), Query Frame = 1 Query: 190 MATGNRTGVYRKKRDXXXXXXXXXXXXXXXXXXX-VIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477 MAT NRT VYRK RD VIEMVSGS RSN SSYAPL++ DPGPSSSDAF++G+PPAWVDD+EEI N Q+ R KM EL Sbjct: 1 MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNEL 97 HSP 2 Score: 80.8777 bits (198), Expect = 4.658e-40 Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 2 Query: 476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679 + +FGD K +E+LT+EITDLLR SEKRL LS G SE+SNLRKNVQ SLATDLQN SM + K Sbjct: 106 MPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRK 173
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP41_ARATH (Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 9.248e-38 Identity = 58/129 (44.96%), Postives = 71/129 (55.04%), Query Frame = 1 Query: 91 ISVKQNSLFTRNCKSKLRSINSCFRIQFPFSLSMATGNRTGVYRKKRDXXXXXXXXXXXXXXXXXXXVIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477 ++ + +L R ++ LRS+ + P S S TG R+G VIEM S SLL NRS YAP+STEDPG SS A +VGLPPAWVD +EEI+VN QRAR KMAEL Sbjct: 1 MATRNRTLLFRKYRNSLRSVRA------PLSSSSLTGTRSG----------------------GVGPVIEMASTSLLNPNRS-YAPISTEDPGTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAEL 100 HSP 2 Score: 87.0409 bits (214), Expect = 9.248e-38 Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 2 Query: 476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679 + SFGDGK+DQH IE LT EIT LL+ SEK+L +LSA+G SEDSN+RKNVQ SLATDLQ SM ++K Sbjct: 109 MPSFGDGKEDQHNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLSMELRKK 176
BLAST of CK932938 vs. ExPASy Swiss-Prot
Match: SYP43_ARATH (Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 8.282e-36 Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 2 Query: 476 LSSFGDGKQDQHMIEILTYEITDLLRGSEKRLDKLSAAGSSEDSNLRKNVQHSLATDLQNHSMGPQEK 679 + SFGDGK+DQH IE LT E+T LL+ SEK+L +LSAAG SEDSN+RKNVQ SLATDLQN SM ++K Sbjct: 117 MPSFGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKK 184 HSP 2 Score: 79.337 bits (194), Expect = 8.282e-36 Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 1 Query: 292 VIEMVSGSLLRSNRSSYAPLSTEDPGPSSSDAFSVGLPPAWVDDAEEIAVNTQRARVKMAEL 477 VIEM S SLL NRS YAP+STEDPG SS +VGLPP WVD +EEI+V QRAR KMAEL Sbjct: 48 VIEMASTSLLNPNRS-YAPVSTEDPGNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAEL 108 The following BLAST results are available for this feature:
BLAST of CK932938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK932938 ID=CK932938; Name=CK932938; organism=Citrus sinensis; type=EST; length=705bpback to top |