CK932972

Overview
NameCK932972
Unique NameCK932972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932972_ssr203 microsatellite CK932972_ssr203:203..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1509 contig Csv1_Contig1509:1..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_PIG (Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.872e-25
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F YH +  I +LYSLHSW GI V  L+  QWL G   F +PG S  LRS   P HV FG  +++L+V  A +G  E L F   +  + + SE +L N   ++ + +GA V++
Sbjct:   35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVGLGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQLGTKYSAFESEGVLANVLGLLLVAFGAVVLY 218          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_MOUSE (Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.510e-24
Identity = 60/187 (32.09%), Postives = 88/187 (47.06%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGLNLR-KEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE +   L FN+HP+           +A++ Y+      K   K                   A F YH +    +LYSLHSW GI V  LY +QWL GF  F +PG S  LRS   P H+ FG  +++ +V  A +G  E L F   S  + +  E +L N   ++ + +G  V++
Sbjct:   33 WLGLYRGGIAWESS---LQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLANVLGLLLVCFGVVVLY 216          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_PONAB (Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24
Identity = 61/187 (32.62%), Postives = 87/187 (46.52%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE    +L FN HP+           +A++ Y+   N  K   K                   A F YH +    +LYSLHSW GI V  LY +QWL GF  F +PG S  LRS   P H+ FG  +++L+V  A +G  E L F      + +  E +L N   ++   +G  V++
Sbjct:   34 WLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFKLRDKYSAFEPEGVLANVLGLLLACFGGAVLY 217          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_HUMAN (Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.246e-23
Identity = 61/187 (32.62%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE    +L FN HP+            A++ Y+   N  K   K                   A F YH +    +LYSLHSW GI V  LY +QWL GF  F +PG S  LRS   P H+ FG  +++L+V  A +G  E L F      + +  E +L N   ++   +G  V++
Sbjct:   34 WLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGGKYSAFEPEGVLANVLGLLLACFGGAVLY 217          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_SHEEP (Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 60/187 (32.09%), Postives = 89/187 (47.59%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F++H +    +LYSLHSW GI V +L+  QWL GF  F +PG S  LRS   P HV FG  +++L+VA A +G  E L F   +  + +  E +L N   ++   +   V++
Sbjct:   35 WLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSTFEPEGVLANVLGLLLAAFATVVLY 218          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CY561_BOVIN (Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.624e-23
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F++H +    +LYSLHSW GI V +L+  QWL GF  F +PG S  LRS   P HV FG  +++L+VA A +G  E L F   +  + +  E +L N   ++   +   +++
Sbjct:   35 WLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSMFEPEGVLANVLGLLLATFATVILY 218          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYAC3_RAT (Cytochrome b ascorbate-dependent protein 3 OS=Rattus norvegicus GN=Cybasc3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.597e-21
Identity = 65/195 (33.33%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS---EALLVNFTAVITILYGAFVIF 869
            W   +RGG AW+ T   L+FN HPV            A + Y+      G  L  +V                     A F +HN S I +LYSLHSWLGI  ++L+  QW  GF +F  P  S  LRS   P HV FG  +  L++A+   G  EKL F+  +    Y S   EA+  N T ++ + +G  V++
Sbjct:   27 WMQYWRGGFAWDGTV--LMFNWHPVLMVSGMVVLYGAASLVYRLPASWVGPKLPWKVLHAALHLLAFTVTVVGLT---AVFGFHNHSKITHLYSLHSWLGITTVALFACQWFLGFAVFLLPWASQWLRSLLKPVHVFFGACILSLSIASVISGINEKLFFVLKNATRPYSSLPGEAVFANSTGILVVSFGLLVLY 216          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYAC3_MOUSE (Cytochrome b ascorbate-dependent protein 3 OS=Mus musculus GN=Cybasc3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 64/195 (32.82%), Postives = 89/195 (45.64%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYGS---EALLVNFTAVITILYGAFVIF 869
            W   +RGG AW+ T   L+FN HPV            A + Y+      G  L  +V                     A F++HN S I +LYSLHSWLGI  + L+  QW  GF +F  P  S  LRS   P HV FG  +  L++ +   G  EKL F+  +    Y S   EA+  N T ++ + +G  V++
Sbjct:   27 WMQYWRGGFAWDGTV--LMFNWHPVLMVAGMVVLYGAASLVYRLPSSWVGPRLPWKV---LHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWLGITTVVLFACQWFLGFAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLFFVLKNATKPYSSLPGEAVFANSTGLLVVAFGLLVLY 216          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYAC3_BOVIN (Cytochrome b ascorbate-dependent protein 3 OS=Bos taurus GN=CYBASC3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20
Identity = 63/195 (32.31%), Postives = 89/195 (45.64%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTFLENSGLAKYG---SEALLVNFTAVITILYGAFVIF 869
            W   + GG AW+ +   L+FN HPV            A + Y+      G  L     K                  +A F++HN + I +LYSLHSWLGI  + L+  QW  GF +F  P  S  LRS   P HV FG  +  LA+A+   G  EKL F   +G   Y    SEA+  N   ++ +++G  V++
Sbjct:   27 WMRYWHGGFAWDGSM--LMFNWHPVLMVTGMVVLYSAASLVYRLPQSWVGPRLPW---KSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWLGITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLFFSLKNGTKTYSNLPSEAVFANCAGMLVVVFGLLVLY 216          
BLAST of CK932972 vs. ExPASy Swiss-Prot
Match: CYBR1_XENLA (Cytochrome b reductase 1 OS=Xenopus laevis GN=cybrd1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.425e-19
Identity = 60/190 (31.58%), Postives = 89/190 (46.84%), Query Frame = 3
Query:  312 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK---GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGIQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLTF-LENSGLAKYGSEALLVNFTAVITILYGAFVIF 869
            W L +R GL W+       FN HPV            AI+ Y+        K + K                   A F +HN   I N+YSLHSW+G+ V+ LY +Q + G  I+  P  S  LR+  +P HV  GLF++   +A A +G  EKL F L+    +K   EA+ VN   ++ +++G  V++
Sbjct:   28 WVLHWREGLGWDGGAAE--FNWHPVLVTSGFIFIQGIAIIVYRLPWTWKCSKLLMKFIHAGLHLTALIFTIVALVAVFDFHNAKNIPNMYSLHSWIGLTVVILYALQLVLGVSIYLLPFASNTLRAALMPVHVYSGLFIFGTVIATALMGITEKLIFSLKEPPYSKLPPEAIFVNTFGLLILVFGGLVVW 215          
The following BLAST results are available for this feature:
BLAST of CK932972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CY561_PIG3.872e-2533.69Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1[more]
CY561_MOUSE2.510e-2432.09Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=... [more]
CY561_PONAB5.592e-2432.62Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=... [more]
CY561_HUMAN1.246e-2332.62Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=... [more]
CY561_SHEEP2.775e-2332.09Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1[more]
CY561_BOVIN3.624e-2331.55Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2[more]
CYAC3_RAT2.597e-2133.33Cytochrome b ascorbate-dependent protein 3 OS=Ratt... [more]
CYAC3_MOUSE4.431e-2132.82Cytochrome b ascorbate-dependent protein 3 OS=Mus ... [more]
CYAC3_BOVIN2.872e-2032.31Cytochrome b ascorbate-dependent protein 3 OS=Bos ... [more]
CYBR1_XENLA1.425e-1931.58Cytochrome b reductase 1 OS=Xenopus laevis GN=cybr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_C07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932972 ID=CK932972; Name=CK932972; organism=Citrus sinensis; type=EST; length=874bp
GGGGGGAATGTGAATAACTAGCCCAGTAATTAGCAAAGTCCACGTGGCAC
CGACCCAAGATGAAACAGAGATCTCCATCCAACGGTCGGACTCAAGTAAA
ATAATTCGTACAGAAACAACAACTCAGCAGACGTAGCCAAAGAAACAGAT
AAAGGGCCAACGACTTTGCTAACTCTGTAAGCAGCTTTTCTTCTGCCTCT
CAAAGAAGAAGAAGAAGAAGAAGAAGAGAGATGGCTATCGGAGTAAAAGC
TCTTCCGATCACGTTTGTGGCACACGCGGTTGCCATCGTGGCTGCGATTA
TGGTGCTGGTTTGGTGCCTTGGCTTTCGCGGTGGATTAGCATGGGAAGAT
ACTAATAAAAATCTCATCTTCAATCTACATCCTGTGCTGATGCTGATTGG
CTTAATCATCATTGGGGGTGAAGCCATTATGAGTTACAAAGGACTTAATT
TGAGAAAAGAAGTGAAGAAAGTGATACACCTTGTTCTCCATGCTATTGCG
CTTATACTGGGCATTATCGGCATCTATGCTGCTTTCAAATATCATAACGA
GAGCGCCATTGTCAATCTTTATAGCTTGCATTCTTGGCTTGGAATTGCCG
TAATTTCCCTTTATGGCATTCAGTGGTTATACGGGTTTGTAATTTTCTTC
TATCCTGGAGGATCAACTGGACTAAGAAGTGAATCGCTTCCATGGCACGT
ACTATTCGGGCTGTTTGTGTACATTCTGGCCGTTGCCAATGCAGCCATCG
GGTTCCTGGAGAAGCTCACATTCCTGGAGAATTCAGGCCTTGCTAAATAT
GGCTCTGAGGCTTTGCTTGTCAACTTCACCGCTGTTATCACAATCTTATA
TGGAGCCTTTGTTATATTCTCTGT
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