CK932974 | Citrus Genome Database

Overview


Name	CK932974
Unique Name	CK932974
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	605

Libraries


Library Name	Type
Developing fruit juice sac at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae GN=GIS2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.580e-24
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 3

Query:  255 LCNNCKRPGHFARECP-----NVAVCNNCGLPGHIASECTTQARCWNCREPGHMASNC--------HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            LC NC +PGH   +C          C NCG  GH+ SECT Q RC+NC + GH++  C         ++  C+ CG   H A+DC    + G     C  C + GH++ DC ND+ C NC +TGHI++DC
Sbjct:   24 LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMK--EDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150

HSP 2 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 3

Query:  360 TQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            +Q  C+ C + GH+A +C +E +C++C K GH   DC+  +    + + C NC + GH+ ++CT  + C NC +TGHI+R+C
Sbjct:    2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCT--MPRTVEFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISREC 80

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C      C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171

HSP 2 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 54/153 (35.29%), Postives = 69/153 (45.10%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHIASECTTQA-RCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                                +C  CG  GH+A +C  Q   C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 150

HSP 3 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3

Query:  246 QGNLCNNCKRPGHFAREC-----PNVAVCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            Q + C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 172

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C      C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171

HSP 2 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 54/153 (35.29%), Postives = 69/153 (45.10%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHIASECTTQA-RCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                                +C  CG  GH+A +C  Q   C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 150

HSP 3 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3

Query:  246 QGNLCNNCKRPGHFAREC-----PNVAVCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            Q + C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 172

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C      C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171

HSP 2 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 54/153 (35.29%), Postives = 69/153 (45.10%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHIASECTTQA-RCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                                +C  CG  GH+A +C  Q   C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 150

HSP 3 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3

Query:  246 QGNLCNNCKRPGHFAREC-----PNVAVCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            Q + C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   70 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 172

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   88 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 54/146 (36.99%), Postives = 69/146 (47.26%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA----------------------VCNNCGLPGHIASECTTQA-RCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                         +C  CG  GH+A +C  Q   C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 143

HSP 2 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP-NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C      C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   40 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164

HSP 3 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3

Query:  246 QGNLCNNCKRPGHFAREC-----PNVAVCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            Q + C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   63 QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 165

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   81 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe GN=byr3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 55/135 (40.74%), Postives = 68/135 (50.37%), Query Frame = 3

Query:  249 GNLCNNCKRPGHFARECPNVAVCNNCGLPGHIASECT---TQARCWNCREPGHMASNCHNE------GICHSCGKTGHRARDCSTH-VQSGGDL---RLCNNCY---KPGHIAADCTNDKACKNCRKTGHIARDC 605
            G  C NC   GH AREC   ++C NC   GH ASECT    +  C+ C   GH+  +C +         C+ CG+ GH ARDC T+  QSGG     R   NCY     GH A DCT    C +C K GH + +C
Sbjct:   16 GPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC 150

HSP 2 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 46/145 (31.72%), Postives = 65/145 (44.83%), Query Frame = 3

Query:  234 RSFSQGNLCNNCKRPGHFARECPNVA---VCNNCGLPGHIASECTTQ------ARCWNCREPGHMASNCHNEGI--------------CHSCGKTGHRARDCSTHV---------------QSGGDLRLCNNCYKPGHIAADCTN 554
            R  ++G++C NC + GH A EC        C  CG  GH+  +C +       A C+ C   GH+A +C   G               C++CG  GH+ARDC+  V               Q   D +LC  C +PGHIA +CT+
Sbjct:   30 RECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTS 174

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 57/167 (34.13%), Postives = 72/167 (43.11%), Query Frame = 3

Query:  258 CNNCKRPGHFARECPNV--------AVCNNCGLPGHIASECTTQAR--------CWNCREPGHMASNCHNEG--------ICHSCGKTGHRARDCSTH----------------VQSG--GDLRLCNNCYKPGHIAADCTN---------DKACKNCRKTGHIARDC 605
            C NC + GH+ARECP            C  CG  GH++ EC  +AR        C+ C E GHM+ +C N           C+ CG+ GH +RDC +                  Q G  GD R C  C   GHI+ DC N         D+ C  C   GHI+RDC
Sbjct:   18 CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGD-RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDC 183

HSP 2 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 47/175 (26.86%), Postives = 73/175 (41.71%), Query Frame = 3

Query:  243 SQGNLCNNCKRPGHFARECPNVA------------------------VCNNCGLPGHIASECTT---------QARCWNCREPGHMASNCHN---------EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT------------NDKACKNCRKTGHIARDC 605
            ++G  C  C + GH +R+CP+                           C  CG  GHI+ +C              C+ C + GH++ +C N         +  C+ CG++GH +R+C +   +G   R C  C KPGHI+ +C              D+ C  C + GHI+RDC
Sbjct:   94 AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268

HSP 3 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 49/177 (27.68%), Postives = 72/177 (40.68%), Query Frame = 3

Query:  225 ETRRSFSQGNLCNNCKRPGHFARECPNVA--------VCNNCGLPGHIASECTT------------------------QARCWNCREPGHMASNCHN---------EGICHSCGKTGHRARDCSTHV--QSGGDLRLCNNCYKPGHIAADC-------TNDKACKNCRKTGHIARDC 605
            E R   +    C  C   GH +R+CPN A         C  CG  GH++ +C +                           C+ C + GH++ +C N         +  C+ CG  GH +RDC       SG   R C  C + GH++ +C       + D+AC  C K GHI+R+C
Sbjct:   61 EARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC 237

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP--NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C       C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   47 SSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172

HSP 2 Score: 95.1301 bits (235), Expect = 2.861e-19
Identity = 54/154 (35.06%), Postives = 69/154 (44.81%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA-----------------------------VCNNCGLPGHIASECTTQ--ARCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                                +C  CG  GH+A +C  Q    C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 151

HSP 3 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 3

Query:  258 CNNCKRPGHFARECPNVA-----VCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 173

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   89 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 3

Query:  237 SFSQGNLCNNCKRPGHFARECP--NVAVCNNCGLPGHIASECTTQAR-----CWNCREPGHMASNCHN--EGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADC--TNDKACKNCRKTGHIARDC 605
            S S  ++C  C   GH A++C       C NCG  GHIA +C    R     C+NC +PGH+A +C +  E  C+SCG+ GH  +DC T V+       C  C + GH+A +C  T++  C  C ++GH+AR+C
Sbjct:   41 SSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVK-------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166

HSP 2 Score: 97.0561 bits (240), Expect = 7.528e-20
Identity = 54/148 (36.49%), Postives = 69/148 (46.62%), Query Frame = 3

Query:  252 NLCNNCKRPGHFARECPNVA-----------------------VCNNCGLPGHIASECTTQA--RCWNCREPGHMASNC-----HNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCTNDKACKNCRKTGHIARDC 605
            N C  C R GH+ARECP                          +C  CG  GH+A +C  Q    C+NC   GH+A +C       E  C++CGK GH ARDC        D + C +C + GHI  DCT  K C  C +TGH+A +C
Sbjct:    4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC-----DHADEQKCYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC 145

HSP 3 Score: 80.1073 bits (196), Expect = 9.523e-15
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 3

Query:  258 CNNCKRPGHFARECPNVA-----VCNNCGLPGHIASEC--TTQARCWNCREPGHMASNCHNEGICHSCGKTGHRARDCSTHVQSGGDLRLCNNCYKPGHIAADCT 551
            C NC R GH A++C          C NCG PGH+A +C    + +C++C E GH+  +C  +  C+ CG+TGH A +CS   +       C  C + GH+A +CT
Sbjct:   69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTSEVN-----CYRCGESGHLARECT 167

HSP 4 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3

Query:  222 RETRRSFSQGNLCNNCKRPGHFARECPNV--AVCNNCGLPGHIASECTTQARCWNCREPGHMASNCH--NEGICHSCGKTGHRARDCS 473
            +E +R   Q   C NC +PGH AR+C +     C +CG  GHI  +CT + +C+ C E GH+A NC   +E  C+ CG++GH AR+C+
Sbjct:   83 KEPKREREQ--CCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCT-KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167

[Close]

BLAST of CK932974 vs. ExPASy Swiss-Prot
Match: Y3800_DROME (CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 49/157 (31.21%), Postives = 65/157 (41.40%), Query Frame = 3

Query:  243 SQGNLCNNCKRPGHFARECP-------------------------------NVAVCNNCGLPGHIASECTTQA-RCWNCREPGHMASNC--HNEGICHSCGKTGHRARDCSTHVQSGGDLRL-CNNCYKPGHIAADC-TNDKACKNCRKTGHIARDC 605
            S    C  C RPGHFAR+C                                N   C  C   GH A  C  +A RC+ C   GH++ +C   +   C+ C KTGH  R+C   V   G   + C  C + GHI+ +C    K C  C K+GH+ R+C
Sbjct:    2 SMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRREC 158

The following BLAST results are available for this feature:

BLAST of CK932974 vs. ExPASy Swiss-Prot

BLAST of CK932974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14


Match Name	E-value	Identity	Description
GIS2_YEAST	6.580e-24	39.23	Zinc finger protein GIS2 OS=Saccharomyces cerevisi...	[more]
CNBP_RAT	3.379e-20	38.35	Cellular nucleic acid-binding protein OS=Rattus no...	[more]
CNBP_PONAB	3.379e-20	38.35	Cellular nucleic acid-binding protein OS=Pongo abe...	[more]
CNBP_HUMAN	3.379e-20	38.35	Cellular nucleic acid-binding protein OS=Homo sapi...	[more]
CNBP_BOVIN	3.379e-20	36.99	Cellular nucleic acid-binding protein OS=Bos tauru...	[more]
BYR3_SCHPO	3.379e-20	40.74	Cellular nucleic acid-binding protein homolog OS=S...	[more]
HEXP_LEIMA	4.413e-20	34.13	DNA-binding protein HEXBP OS=Leishmania major GN=H...	[more]
CNBP_MOUSE	4.413e-20	38.06	Cellular nucleic acid-binding protein OS=Mus muscu...	[more]
CNBP_CHICK	4.413e-20	38.06	Cellular nucleic acid-binding protein OS=Gallus ga...	[more]
Y3800_DROME	7.791e-17	31.21	CCHC-type zinc finger protein CG3800 OS=Drosophila...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004349_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_C10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK932974 ID=CK932974; Name=CK932974; organism=Citrus sinensis; type=EST; length=605bp
GGGGATAGCATCCGCCCTTTTTCNNCTCTAGCAAAGGAAAGCTGTGTTGT
GGGGGTGGTGTATTTGTGGATCTGTGGTGTTTTACGTGATTAATAGGAGA
TTTAAACATGAGTTCACGCAGCAGGAGCATTAGCAGGAGCCGGAGTCGGA
GTCGAAGTAGGAGTCCACGAGATCGCAGGTTCCGATCTCGACACTCTTCC
TATTGCGACCCTCCTTTAAGGAGAGAAACACGTCGCAGTTTCAGCCAAGG
CAATCTGTGCAACAACTGCAAGCGGCCTGGTCATTTTGCAAGAGAGTGCC
CTAATGTTGCTGTTTGTAACAACTGTGGTCTTCCTGGGCACATCGCATCA
GAATGCACCACGCAGGCACGATGCTGGAATTGTCGAGAACCTGGACATAT
GGCAAGCAACTGTCACAACGAGGGCATCTGCCACTCTTGTGGCAAAACTG
GACATCGTGCTAGAGACTGCTCGACTCATGTGCAGTCAGGGGGGGACTTG
AGACTCTGCAACAATTGCTACAAGCCGGGGCACATTGCAGCAGACTGTAC
CAATGACAAAGCATGCAAGAATTGCCGGAAAACAGGCCACATAGCACGCG
ATTGT