CK932978

Overview
NameCK932978
Unique NameCK932978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932978_ssr142 microsatellite CK932978_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:13..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.850e-32
Identity = 72/160 (45.00%), Postives = 102/160 (63.75%), Query Frame = 2
Query:  332 EQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            E  GQS W DNL R + +   L  +I   G+RG+TSNPAIF+KAI+ +  Y+      +++ K +   Y  LV KDI+DAC  F  +Y+ET G DGY+S+EV P +A DT+ T+  A   +  + R N+ IKIP T   +P++  VIS+GI+VNVTL+FS
Sbjct:   10 ENLGQSIWMDNLSRNIIESGELKSMIGKKGIRGITSNPAIFEKAIAGNAIYDADIEAGIKASKSVIEIYESLVFKDIRDACDIFMPVYEETKGLDGYISIEVPPTIAKDTESTISEAIRYYTAIGRENLMIKIPGTPEGLPAVTRVISEGINVNVTLLFS 169          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.116e-31
Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  341 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIF 796
            G + W D++ R      +L  L+A+  V GVTSNP IFQKAI+SS+ YN+Q R+L   G D+  A   +   D+++AC     +YD + G DG VS+EV PRLA + + TV  A+ L  +V+RPN++IKIPAT   +P+I E ++QGISVNVTLIF
Sbjct:   12 GVAVWLDDISRDRLRTGNLADLVANRSVVGVTSNPTIFQKAIASSDLYNEQLRDLKVRGVDVGEAVRAITAADVREACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTVAEARALWWLVDRPNLFIKIPATQDGLPAITETLAQGISVNVTLIF 167          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.169e-31
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            GQS W DNL R +     L  +IA  GV GVTSNP+IFQ A+++S  Y D    L +   D+E  Y  LVI DI+DAC     +++ + G DGYVS+EV+PRLA DT GTV+ A+ L  +V+RPN+ +K+P T   V + + +   GI+VNVTL+FS
Sbjct:   11 GQSLWLDNLSRDLLRDGALAKMIAEDGVSGVTSNPSIFQNALATSPHYADDLARLRREEADVERRYEALVIPDIRDACDLLLPLFERSAGNDGYVSLEVAPRLAYDTSGTVDEARRLWSLVDRPNLLVKVPGTPEGVDAFETLTQLGINVNVTLLFS 167          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.564e-30
Identity = 77/157 (49.04%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R       L  LI    V GVT+NP+IFQ AIS   +Y  Q  EL   G D+EAA +++  +D+ +AC  F  I   + G DG VS+EV PR A DTQGT+E AK LH  V + NV+IKIPAT   + +I E +  GISVNVTLIFS
Sbjct:   12 GVSIWLDDLSRERLTSGSLQKLIDEKNVVGVTTNPSIFQAAISKGTSYEQQVSELAAQGADVEAAVFQITTQDVANACDFFAGIAVASKGVDGRVSIEVDPRKAWDTQGTIEEAKRLHAAVGKDNVHIKIPATLEGLEAITETLGAGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL2_NOSP7 (Transaldolase 2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tal2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.014e-29
Identity = 66/160 (41.25%), Postives = 104/160 (65.00%), Query Frame = 2
Query:  332 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            +Q GQS W DNL R +    +L  ++ + G+ G+TSNPAIF+KAI+ +  Y+      V++G  I   Y  LV  DI++AC     +Y+ +N  DGYVS+EV P +A DT+ T+  A+   + + R N+ IKIP T P +P++++VI++G++VN+TL+FS
Sbjct:   10 KQYGQSIWMDNLTRDIIQSGELKDMVENQGISGITSNPAIFEKAIAGNAIYDADIEAGVRAGLPIYKIYESLVFADIRNACDILRPVYEASNRLDGYVSIEVPPTIAHDTEATISEARRYFQEIGRENLMIKIPGTEPGLPAVEQVIAEGMNVNITLLFS 169          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.324e-29
Identity = 72/156 (46.15%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  341 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIF 796
            G + W D++ R      +L  L+ + GV GVTSNP IFQKAISSS+ Y++Q  +L   G D+  A   +   D++DAC     +YD + G DG VS+EV PRLA + + T+  A+ L  +V+RPN++IKIPAT   + +I E ++QGISVNVTLIF
Sbjct:   12 GVAVWLDDISRDRLRTGNLAHLVENRGVVGVTSNPTIFQKAISSSDLYDEQLHDLAIRGVDVGEAVRAITAADVRDACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTLAEARALWWLVDRPNLFIKIPATRAGLSAITETLAQGISVNVTLIF 167          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL2_STRCO (Transaldolase 2 OS=Streptomyces coelicolor GN=tal2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.324e-29
Identity = 77/158 (48.73%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  338 EGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L   G  +E A   +   D++DA      +YD T G DG VS+EV PRLA +T  TV  AK L  +V+RPN +IKIPAT   +P+I E I  GISVNVTLIFS
Sbjct:   11 EGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQLADLAVRGVTVEEAIRMITTADVRDAADILRPVYDNTGGKDGRVSIEVDPRLAHNTHATVAEAKQLAWLVDRPNTFIKIPATEAGLPAIAETIGLGISVNVTLIFS 168          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.324e-29
Identity = 78/158 (49.37%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  338 EGQSPWYDNLCRP-VT--DLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            EG S W D+L R  +T  +L  LIA   V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A      +YD T G DG VS+EV PRLA DT+ T+  AK L  +V+RPNV IKIPAT   +P+I EVI  GISVNVTLIFS
Sbjct:   17 EGVSIWLDDLSRKRITSGNLAELIAHKHVVGVTTNPSIFQAAIGSGEGYEEQLADLAVRGVTVDEAVRMMTTADVRAAADILRPVYDATGGRDGRVSIEVDPRLAHDTEATIAEAKQLAWLVDRPNVMIKIPATKAGLPAITEVIGLGISVNVTLIFS 174          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCTU (Transaldolase OS=Mycobacterium tuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC      +++++G DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFS 171          
BLAST of CK932978 vs. ExPASy Swiss-Prot
Match: TAL_MYCTA (Transaldolase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tal PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  341 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKHFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGISVNVTLIFS 799
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC      +++++G DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GISVNVTLIFS
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVTLIFS 171          
The following BLAST results are available for this feature:
BLAST of CK932978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_TRIEI2.850e-3245.00Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_FRAAA4.116e-3147.44Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL_THIDA9.169e-3147.13Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL_RENSM1.564e-3049.04Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL2_NOSP71.014e-2941.25Transaldolase 2 OS=Nostoc punctiforme (strain ATCC... [more]
TAL_FRASC1.324e-2946.15Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]
TAL2_STRCO1.324e-2948.73Transaldolase 2 OS=Streptomyces coelicolor GN=tal2... [more]
TAL1_STRAW1.324e-2949.37Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL_MYCTU2.950e-2945.22Transaldolase OS=Mycobacterium tuberculosis GN=tal... [more]
TAL_MYCTA2.950e-2945.22Transaldolase OS=Mycobacterium tuberculosis (strai... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_B09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932978 ID=CK932978; Name=CK932978; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTATCGTACTCCGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTG
AGTTTTTAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAG
CTTACAAATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATC
ATCCTCACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCA
ATTCAAAAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTG
AAGGCCTCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAG
TGCAAAGAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCC
CTTGGTATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATT
GCAAGTGGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGC
AATATCTTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAAT
CTGGAAAAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATT
CAAGATGCATGCAAACACTTTGAGTCAATCTATGATGAAACCAATGGCGG
TGATGGCTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCC
AAGGGACTGTGGAGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCC
AATGTATACATAAAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAA
GGAAGTTATTTCGCAGGGCATTAGTGTCAATGTGACTCTCATATTCTCCC
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