CK932985
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 9.207e-63 Identity = 121/168 (72.02%), Postives = 138/168 (82.14%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAEN 501 GAA+EVG +G EGYCVNVPW+ GGVGD DY+FAFQ+VVLPIAS F PDF IISAGFDAARGDPLGCCDVTPAGY++MT ML L GGK+LVILEGGYNLRSIS+SAT+VIKVLLGENP EL + PS +GL TVL+VL IQ+ FWPSLA +++L S E EN Sbjct: 348 GAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWPSLAISYSKLLSELEARLIEN 515
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2) HSP 1 Score: 155.221 bits (391), Expect = 1.749e-37 Identity = 75/149 (50.34%), Postives = 102/149 (68.46%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 GA+++VG D G+ VNVPWN +GD DY+ A+ +VLPIA EF+P+ +ISAGFDAA+GDPLG C VTP GYA +TH+L L+GG++++ILEGGYNL SIS S + LLG+ P P LV++ EV+++ +W SL Sbjct: 685 GASSQVGRDAGIGFTVNVPWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQSGALVSISEVIQVHRKYWRSL 833 HSP 2 Score: 130.183 bits (326), Expect = 6.023e-30 Identity = 62/146 (42.47%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 16 VGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDS--APSKSGLVTVLEVLKIQMNFWPSL 447 +G +GY +NVPWN+ G+ D DY+ AF +++LP+ASEF P +++AGFDA GDP G TPAG+A +TH+L L+GGKL++ LEGGYNLR+++ ++ + LLG+ C + +S P S +++ L+ FW L Sbjct: 294 IGFGQGQGYTINVPWNQTGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALHGDPKGEMAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGISASLHTLLGD--PCPMLESCVVPCASAQISIYCTLEALEPFWEVL 437
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 8.122e-35 Identity = 68/149 (45.64%), Postives = 98/149 (65.77%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 GA++++G G+ VNV WN +GD DY+ A+ +VLPIA EF+P+ ++SAGFDAARGDPLG C V+P GYA +TH+L L+ G++++ILEGGYNL SIS S + + LLG+ P P L ++ E +++ +W SL Sbjct: 686 GASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSL 834 HSP 2 Score: 131.339 bits (329), Expect = 2.704e-30 Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1 Query: 19 GIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 G +GY +NVPWN+ G+ D DY+ AF +V+LP+A EF P +++AGFDA +GDP G TPAG+AQ+TH+L L+GGKL++ LEGGYNLR+++ ++ + LLG+ AP +S +V L+ FW L Sbjct: 296 GFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVL 438
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA1_YEAST (Histone deacetylase HDA1 OS=Saccharomyces cerevisiae GN=HDA1 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.412e-33 Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD--SAPSKSGLVTVLEVLKIQMNFWPSLASCF 459 G ++ G EG+ N+ W GGVGD +Y++AF+ VV+P+ EF PD IIS+GFDAA GD +G C VTP+ Y MTHML +L+ G L V+LEGGYNL +I+ SA SV KVL+GE P EL D S P + + +V+++Q +W +CF Sbjct: 282 GQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPPD-ELPDPLSDPKPEVIEMIDKVIRLQSKYW----NCF 431
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 5.821e-33 Identity = 72/146 (49.32%), Postives = 92/146 (63.01%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFW 438 G A G G VN+PW+ G+GD DY++AFQ VV+P+A EFDPD I+S GFDAA GD +G +TPA YA MT ML L+ GK+ + LEGGYNL SIS+SA +V + LLG PG L + + T+ V KIQ +W Sbjct: 271 GCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPG-RLHTTYACPQAVATINHVTKIQSQYW 415
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 4.612e-30 Identity = 62/147 (42.18%), Postives = 95/147 (64.63%), Query Frame = 1 Query: 7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 A+ VG +G+ VN+PWN+ G+G+ DY+ AF +V+LP+A EFDP+ ++SAGFD+A GDP G TP +A +T +L L+GG++ +LEGGY+L S++ S +++ LLG+ LG P +S L ++ V Q +W SL Sbjct: 211 ADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQSVQTAQTPYWTSL 357
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 2.989e-29 Identity = 65/167 (38.92%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAEN 501 G N VG EG+ +NVPW +GG GD DY+ + ++++P+ EF PD ++SAGFDAA GDPLG C VTP GY+ M L + GK+++ LEGGYNL S+ S+ + ++VLL + ++ P +S + V + +WPSL + ++L A N Sbjct: 268 GDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAHGKIVLALEGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSLDASMASNENLKNPSAERN 434
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29 Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLA 450 G N VG EG+ +NVPW++G GD DY+ A+ ++++P+A EF+PD +SAGFDAA DPLG C VTP GY+ M L + GK+++ LEGGYNL SI+ S+ + ++VLL + ++ P +S + V K +WPSLA Sbjct: 235 GDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQAVRKRLCTYWPSLA 384
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28 Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = 1 Query: 10 NEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD------SAPSK---SGLVTVLEVLKIQMNFWPSL 447 ++VG EG VNVP++ +GDN+Y AFQ V++PIA +F+PD +ISAGFDAA DPLG VTP +A MT+ L++L+GG+++ +LEGGYNL SIS+SA +V +VL + L + + P K S + T+ EV +Q +W L Sbjct: 638 SDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSLAGGRIITVLEGGYNLTSISNSAQAVCEVLQNRSMLRRLREEKEQFATKPQKIESSCIKTIREVCAVQQKYWSIL 792 HSP 2 Score: 106.686 bits (265), Expect = 7.132e-23 Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 10 NEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAE 498 + +G GY N+ N G D+DY+ +V+LP+A++FDP F IISAGFDA GDPLG +TP GY+ + + L +L+ G++LV+LEGGYN + + + ++VLLG P + AP +S + + + ++ + + W +CF S + A+ Sbjct: 222 DHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFDALLGDPLGGMCLTPDGYSHILYHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEAPKESTVDSCVSLVSVLRHHW----NCFDYFPSRTSLRLAQ 380
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28 Identity = 61/147 (41.50%), Postives = 91/147 (61.90%), Query Frame = 1 Query: 7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447 A+ VG G+ VN+PWN+ G+G+ DYV AF +++LP+A EFDP+ ++SAGFD+A GDP G TP +A +T +L L+GG++ +LEGGY+L S++ S ++ LLG+ G AP +S L ++ Q W SL Sbjct: 211 ADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQSARAAQAPHWKSL 357 The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bpback to top |