CK932985

Overview
NameCK932985
Unique NameCK932985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1511 contig Csv1_Contig1511:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 9.207e-63
Identity = 121/168 (72.02%), Postives = 138/168 (82.14%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELG-DSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAEN 501
            GAA+EVG +G EGYCVNVPW+ GGVGD DY+FAFQ+VVLPIAS F PDF IISAGFDAARGDPLGCCDVTPAGY++MT ML  L GGK+LVILEGGYNLRSIS+SAT+VIKVLLGENP  EL   + PS +GL TVL+VL IQ+ FWPSLA  +++L S  E    EN
Sbjct:  348 GAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIATTPSVAGLQTVLDVLNIQLEFWPSLAISYSKLLSELEARLIEN 515          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.749e-37
Identity = 75/149 (50.34%), Postives = 102/149 (68.46%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            GA+++VG D   G+ VNVPWN   +GD DY+ A+  +VLPIA EF+P+  +ISAGFDAA+GDPLG C VTP GYA +TH+L  L+GG++++ILEGGYNL SIS S  +    LLG+ P        P    LV++ EV+++   +W SL
Sbjct:  685 GASSQVGRDAGIGFTVNVPWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQSGALVSISEVIQVHRKYWRSL 833          

HSP 2 Score: 130.183 bits (326), Expect = 6.023e-30
Identity = 62/146 (42.47%), Postives = 94/146 (64.38%), Query Frame = 1
Query:   16 VGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDS--APSKSGLVTVLEVLKIQMNFWPSL 447
            +G    +GY +NVPWN+ G+ D DY+ AF +++LP+ASEF P   +++AGFDA  GDP G    TPAG+A +TH+L  L+GGKL++ LEGGYNLR+++   ++ +  LLG+   C + +S   P  S  +++   L+    FW  L
Sbjct:  294 IGFGQGQGYTINVPWNQTGMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALHGDPKGEMAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGISASLHTLLGD--PCPMLESCVVPCASAQISIYCTLEALEPFWEVL 437          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.122e-35
Identity = 68/149 (45.64%), Postives = 98/149 (65.77%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            GA++++G     G+ VNV WN   +GD DY+ A+  +VLPIA EF+P+  ++SAGFDAARGDPLG C V+P GYA +TH+L  L+ G++++ILEGGYNL SIS S  +  + LLG+ P        P    L ++ E +++   +W SL
Sbjct:  686 GASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSL 834          

HSP 2 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   19 GIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            G    +GY +NVPWN+ G+ D DY+ AF +V+LP+A EF P   +++AGFDA +GDP G    TPAG+AQ+TH+L  L+GGKL++ LEGGYNLR+++   ++ +  LLG+         AP +S   +V   L+    FW  L
Sbjct:  296 GFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVL 438          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA1_YEAST (Histone deacetylase HDA1 OS=Saccharomyces cerevisiae GN=HDA1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.412e-33
Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD--SAPSKSGLVTVLEVLKIQMNFWPSLASCF 459
            G  ++ G    EG+  N+ W  GGVGD +Y++AF+ VV+P+  EF PD  IIS+GFDAA GD +G C VTP+ Y  MTHML +L+ G L V+LEGGYNL +I+ SA SV KVL+GE P  EL D  S P    +  + +V+++Q  +W    +CF
Sbjct:  282 GQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPPD-ELPDPLSDPKPEVIEMIDKVIRLQSKYW----NCF 431          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.821e-33
Identity = 72/146 (49.32%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFW 438
            G A   G     G  VN+PW+  G+GD DY++AFQ VV+P+A EFDPD  I+S GFDAA GD +G   +TPA YA MT ML  L+ GK+ + LEGGYNL SIS+SA +V + LLG  PG  L  +      + T+  V KIQ  +W
Sbjct:  271 GCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPPG-RLHTTYACPQAVATINHVTKIQSQYW 415          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_MOUSE (Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.612e-30
Identity = 62/147 (42.18%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            A+ VG    +G+ VN+PWN+ G+G+ DY+ AF +V+LP+A EFDP+  ++SAGFD+A GDP G    TP  +A +T +L  L+GG++  +LEGGY+L S++ S   +++ LLG+     LG   P +S L ++  V   Q  +W SL
Sbjct:  211 ADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQSVQTAQTPYWTSL 357          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA18_ARATH (Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.989e-29
Identity = 65/167 (38.92%), Postives = 97/167 (58.08%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAEN 501
            G  N VG    EG+ +NVPW +GG GD DY+  + ++++P+  EF PD  ++SAGFDAA GDPLG C VTP GY+ M   L   + GK+++ LEGGYNL S+  S+ + ++VLL +       ++ P +S    +  V +    +WPSL +     ++L    A  N
Sbjct:  268 GDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAHGKIVLALEGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSLDASMASNENLKNPSAERN 434          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.698e-29
Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    1 GAANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLA 450
            G  N VG    EG+ +NVPW++G  GD DY+ A+ ++++P+A EF+PD   +SAGFDAA  DPLG C VTP GY+ M   L   + GK+++ LEGGYNL SI+ S+ + ++VLL +       ++ P +S    +  V K    +WPSLA
Sbjct:  235 GDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQAVRKRLCTYWPSLA 384          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 69/155 (44.52%), Postives = 99/155 (63.87%), Query Frame = 1
Query:   10 NEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGD------SAPSK---SGLVTVLEVLKIQMNFWPSL 447
            ++VG    EG  VNVP++   +GDN+Y  AFQ V++PIA +F+PD  +ISAGFDAA  DPLG   VTP  +A MT+ L++L+GG+++ +LEGGYNL SIS+SA +V +VL   +    L +      + P K   S + T+ EV  +Q  +W  L
Sbjct:  638 SDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSLAGGRIITVLEGGYNLTSISNSAQAVCEVLQNRSMLRRLREEKEQFATKPQKIESSCIKTIREVCAVQQKYWSIL 792          

HSP 2 Score: 106.686 bits (265), Expect = 7.132e-23
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 1
Query:   10 NEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSLASCFTELQSLWEIYAAE 498
            + +G     GY  N+  N  G  D+DY+    +V+LP+A++FDP F IISAGFDA  GDPLG   +TP GY+ + + L +L+ G++LV+LEGGYN +  + +    ++VLLG  P     + AP +S + + + ++ +  + W    +CF    S   +  A+
Sbjct:  222 DHIGSGKGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFDALLGDPLGGMCLTPDGYSHILYHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEAPKESTVDSCVSLVSVLRHHW----NCFDYFPSRTSLRLAQ 380          
BLAST of CK932985 vs. ExPASy Swiss-Prot
Match: HDA10_HUMAN (Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 61/147 (41.50%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    7 ANEVGIDGAEGYCVNVPWNRGGVGDNDYVFAFQNVVLPIASEFDPDFTIISAGFDAARGDPLGCCDVTPAGYAQMTHMLNALSGGKLLVILEGGYNLRSISSSATSVIKVLLGENPGCELGDSAPSKSGLVTVLEVLKIQMNFWPSL 447
            A+ VG     G+ VN+PWN+ G+G+ DYV AF +++LP+A EFDP+  ++SAGFD+A GDP G    TP  +A +T +L  L+GG++  +LEGGY+L S++ S    ++ LLG+      G  AP +S L ++      Q   W SL
Sbjct:  211 ADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQSARAAQAPHWKSL 357          
The following BLAST results are available for this feature:
BLAST of CK932985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
HDA15_ARATH9.207e-6372.02Histone deacetylase 15 OS=Arabidopsis thaliana GN=... [more]
HDAC6_MOUSE1.749e-3750.34Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=... [more]
HDAC6_HUMAN8.122e-3545.64Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=... [more]
HDA1_YEAST3.412e-3347.74Histone deacetylase HDA1 OS=Saccharomyces cerevisi... [more]
CLR3_SCHPO5.821e-3349.32Histone deacetylase clr3 OS=Schizosaccharomyces po... [more]
HDA10_MOUSE4.612e-3042.18Histone deacetylase 10 OS=Mus musculus GN=Hdac10 P... [more]
HDA18_ARATH2.989e-2938.92Histone deacetylase 18 OS=Arabidopsis thaliana GN=... [more]
HDA5_ARATH8.698e-2943.33Histone deacetylase 5 OS=Arabidopsis thaliana GN=H... [more]
HDA6_CAEEL1.136e-2844.52Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
HDA10_HUMAN1.938e-2841.50Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_A08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932985 ID=CK932985; Name=CK932985; organism=Citrus sinensis; type=EST; length=529bp
GGGGCTGCGAATGAGGTTGGTATTGATGGTGCAGAAGGATATTGTGTAAA
TGTTCCGTGGAATCGTGGTGGAGTTGGAGATAATGATTATGTTTTTGCAT
TTCAGAATGTTGTTCTTCCCATAGCTTCGGAGTTTGATCCTGATTTCACT
ATCATATCAGCTGGATTTGATGCCGCAAGGGGTGATCCTTTAGGCTGCTG
TGATGTAACTCCTGCTGGATATGCACAGATGACACACATGCTGAATGCTC
TCTCCGGTGGCAAGTTGCTTGTTATACTCGAGGGCGGCTACAACCTCCGT
TCAATATCCTCTTCTGCTACTTCAGTGATTAAGGTATTGCTGGGTGAAAA
TCCTGGATGCGAATTAGGTGACTCTGCTCCTTCCAAATCTGGCCTGGTAA
CTGTTCTTGAAGTATTGAAGATTCAGATGAACTTCTGGCCTTCTCTAGCA
TCCTGCTTTACAGAATTGCAGTCACTATGGGAAATATACGCTGCTGAAAA
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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