CK932989

Overview
NameCK932989
Unique NameCK932989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932989_ssr19 microsatellite CK932989_ssr19:19..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9505 contig Csv1_Contig9505:7..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            STGKDAQALFHSLRSAYAATPTTLKIIDLY+GFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.422e-52
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            S  KDAQALFHSLRSAYAATPT LKIIDLY+ FA+ TALIQVVYMAIVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    5 SATKDAQALFHSLRSAYAATPTNLKIIDLYVIFAISTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.942e-51
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST +DA ALF SLRSAY+ATPTTLKIIDLY+GFAV TALIQVVYMAIVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:    8 STAQDAVALFDSLRSAYSATPTTLKIIDLYIGFAVSTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.438e-50
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST KDAQ LF SLRSAY+ATPT LKIIDLY+ FAVFTALIQVVYMA+VGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFRSLRSAYSATPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.878e-50
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST KDAQAL  SLRSAYAATP+ LKIIDLY+ FAVFTALIQVVYMAIVGSFPFN+FLSG+LSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STSKDAQALIQSLRSAYAATPSNLKIIDLYVVFAVFTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.453e-50
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST KDAQ LFHSL SAY ATPT LKIIDLY+ FAVFTALIQV YMA+VGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFHSLHSAYTATPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST KDAQ LFH++ SAY+ATPT LKIIDLY+ FAVFTAL+Q VYMA+VG FPFNSFLSGVLSCVGTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    6 STTKDAQDLFHAIWSAYSATPTNLKIIDLYVVFAVFTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.724e-48
Identity = 92/112 (82.14%), Postives = 104/112 (92.86%), Query Frame = 2
Query:   74 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            ST K+A AL  SLRSAY+ATPT LKIIDLY+ +A+ TA++QVVYMAIVGSFPFN+FLSGVLSC GTA+LAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STAKEAHALIASLRSAYSATPTKLKIIDLYVVYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.139e-47
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   86 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CK932989 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.139e-47
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   86 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 409
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
The following BLAST results are available for this feature:
BLAST of CK932989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_CITUN4.615e-5798.21Defender against cell death 1 OS=Citrus unshiu GN=... [more]
DAD1_SOLLC3.422e-5291.07Defender against cell death 1 OS=Solanum lycopersi... [more]
DAD1_MALDO4.942e-5189.29Defender against cell death 1 OS=Malus domestica G... [more]
DAD1_ARATH1.438e-5088.39Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_BETVE1.878e-5088.39Defender against cell death 1 OS=Betula verrucosa ... [more]
DAD2_ARATH2.453e-5087.50Defender against cell death 2 OS=Arabidopsis thali... [more]
DAD1_PEA1.346e-4885.71Defender against cell death 1 OS=Pisum sativum GN=... [more]
DAD1_PICMA8.724e-4882.14Defender against cell death 1 OS=Picea mariana GN=... [more]
DAD1_ORYSJ1.139e-4787.96Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_ORYSI1.139e-4787.96Defender against cell death 1 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004349_B01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932989 ID=CK932989; Name=CK932989; organism=Citrus sinensis; type=EST; length=611bp
GGGGAGGGCACATGTATCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCCCTT
TTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACAACTCTTAAGAT
CATCGATCTGTATATGGGTTTCGCGGTTTTTACTGCCTTAATTCAGGTAG
TTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCGGGA
GTACTTTCTTGTGTTGGGACAGCCATACTTGCTGTTTGTCTACGTATTCA
AGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAGCTT
TTGCGGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATGAAT
TTCCTTGGATAAACCTTGACCCTGGGTCAACTTAAAATACAATTTTCTTG
GTCGATGACAGTGTGACCTAGCTGTAAAAGTTAGTTACGACATTAATGCA
GATATTTTTCATAGAATGTGAACTTACTATAAATGAAGACGTTGACCATT
TTTGGATTCTTTTGGTTCTATATTTAATTCCGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top