CK933015

Overview
NameCK933015
Unique NameCK933015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933015_ssr89 microsatellite CK933015_ssr89:89..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3249 contig Csv1_Contig3249:36..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 89/139 (64.03%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  129 MASVTGTSACMTSLSCSFKQTQVGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 545
            MASVTGTS  M S   S   ++V              GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA LGADSLDTVEIVMGL           SAQ+I+TVQDAADLIEKLIE KS
Sbjct:    1 MASVTGTSISMASFKASLAPSRVSNLRSVSLPIK---GKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.323e-30
Identity = 78/137 (56.93%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  132 ASVTGTSACMTSLSCSFKQTQVGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            ++  G S C+ S SCS      GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASCS--PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 77/138 (55.80%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  132 ASVTGTSACMTSLSCSFKQTQVGRXXXXXXXXXXXXGKSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            ++  G S C+ S   SF     GR             KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKS--ASFSPLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.110e-28
Identity = 75/139 (53.96%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  132 ASVTGTSACMTSLSCSFKQTQV-GRXXXXXXXXXXXXGKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            A+   +  C+ S SCS  + QV               GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+  K
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26
Identity = 74/137 (54.01%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  132 ASVTGTSACMTSLSCSFKQTQVGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            ++   +S C+ S SCS      GR             KSF S   R +   RV+C AKPETV KVC IVKKQLALP D+ V+G SKF+ALGADSLDTVEIVMGL           SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAPASSICIKSASCS--ALAPGRISSLRSVSLPVSRKSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  246 SFPSLRMR-SAPRFRVSCAA------KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 548
            SF S+  R S+ RF++ CAA      K ETVDKVC IVKKQLA+P  T VT ESKF+ LGADSLDTVEIVMGL           SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 57/98 (58.16%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  258 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKSA 548
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGL           SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  255 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLI 533
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT V+G S FA LGADSLDTVEIVMGL           SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  255 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
BLAST of CK933015 vs. ExPASy Swiss-Prot
Match: ACP2_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  255 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 542
            +LR     R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQAK 133          
The following BLAST results are available for this feature:
BLAST of CK933015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL3.430e-3564.03Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA3.323e-3056.93Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA1.823e-2855.80Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA3.110e-2853.96Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA1.706e-2654.01Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU2.306e-2360.19Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU1.952e-2258.16Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_HORVU7.419e-2261.70Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP_BRACM2.819e-2157.29Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]
ACP2_BRANA8.203e-2157.29Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_G04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933015 ID=CK933015; Name=CK933015; organism=Citrus sinensis; type=EST; length=779bp
GGGGATTGCTCTCCTCTCTTTCTCAGACACACATTACATAGCACGCAGTC
TTCGTGCTCTTCGTCGTCCTCTCTCTCGCTCTCTCTCGCTCTCTCTCTTT
TGAACTTCAAATCTCAGATCTCTATTCAATGGCTTCAGTTACAGGAACTT
CAGCCTGCATGACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGGTCGGT
AGGATCTCTAGTGTGAATTCAGTTTCACTTTCCATCAATGGGAAAAGCTT
CCCATCCCTTAGAATGCGATCAGCACCCCGCTTCCGGGTTTCCTGTGCGG
CCAAGCCTGAGACTGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGTTG
GCACTCCCAGCAGATACTACCGTTACCGGGGAGTCAAAATTCGCTGCCCT
TGGAGCTGATTCTCTTGATACGGTTGAGATTGTGATGGGACTGGAGGAGG
AATTTGGGATCAGCGTTGAAGAAGAAAGTGCCCAGACCATCTCAACCGTT
CAAGATGCTGCAGATCTGATTGAGAAGCTCATTGAGACCAAGAGTGCTTA
ACTAAAATGGTCTGGAGAGAGCCGGGCCTTAGGGACTTAGTTCGTCTAGT
TTCGTTTTCGATCTTTTTGTTGGCTTGTCTCTCAAGGAGTTTCTAGCTTG
TATTGTGAACTTGTCAGTGGTTTTTCTATTCTGTTGTTCCTTCTATTAGA
GAGAACTCAATTAATCAGTTTGCTTGGATTAATCATAAACATGTTCCAGT
TTCGAAAAAAAAAAAAAAAAAAAAAAAAA
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