CK933166

Overview
NameCK933166
Unique NameCK933166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933166_ssr25 microsatellite CK933166_ssr25:25..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1538 contig Csv1_Contig1538:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_PONAB (Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   69 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+L+ K  + N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:   10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116          
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_MOUSE (Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   69 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+L+ K V+ N+  ++ K ++  I  L+  K YLE+   E E N+ E+L
Sbjct:   10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAKEKIKELEQKKSYLERSVKEAEDNIREML 116          
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_BOVIN (Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   69 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+L+ K  + N+  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:   10 KKAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEAIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116          
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_HUMAN (Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   69 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            + AF E++ ++I+   K+K    Q+      KK A+LT  E+  L D TN Y+ +GR F+L+ K  + ++  ++ K +E  I  L+  K YLE+   E E N+ E+L
Sbjct:   10 KKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREML 116          
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_TETNG (Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=pfdn1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 3
Query:   57 DEANRAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            DE  + AF E++ ++I+   K +    Q+      +K A LT  E+  LPDNT  Y+ +GR F+L  K  + N      K ++  +  L+  K YLE+   E E N+ E+L
Sbjct:    6 DEELKKAFTELQAKVIDTQQKARLADLQIDQLTKVQKHARLTQTEMASLPDNTRLYEGVGRMFILRSKEEINNHLTDAQKTADEKVKELEQKKVYLERSVKEAEDNIREML 116          
BLAST of CK933166 vs. ExPASy Swiss-Prot
Match: PFD1_DANRE (Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 33/107 (30.84%), Postives = 59/107 (55.14%), Query Frame = 3
Query:   69 RAAFQEIKGRMIENTGKMKQVQNQMRNKEGEKKRAYLTLEELRQLPDNTNTYKSIGRTFVLEPKSVLMNEQEQRLKDSESAIAALQASKEYLEKQKAEVESNLAELL 389
            + AF E++ +M++   K+K    Q+      KK A LT  E+  LP++T  ++  GR F+L+ K  + N+  ++ K ++  I  L+  K YLE+   + E N+ E+L
Sbjct:   10 KKAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFILQSKGEISNQLLEKQKTADDKIKELEQKKTYLERSVKDAEDNIREML 116          
The following BLAST results are available for this feature:
BLAST of CK933166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PFD1_PONAB5.320e-1334.58Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 ... [more]
PFD1_MOUSE5.320e-1334.58Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 ... [more]
PFD1_BOVIN5.320e-1334.58Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV... [more]
PFD1_HUMAN2.021e-1233.64Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 ... [more]
PFD1_TETNG1.003e-1132.43Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=p... [more]
PFD1_DANRE2.919e-1130.84Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 S... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_G11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933166 ID=CK933166; Name=CK933166; organism=Citrus sinensis; type=EST; length=616bp
GGGGAAATTACAGTATCGGTTCTGAAGCAAGCAAGCAAGCATCCTCAACC
ATGTCTGACGAAGCAAATAGAGCTGCATTTCAAGAGATCAAAGGTCGCAT
GATTGAGAATACTGGAAAAATGAAACAGGTCCAGAACCAGATGCGAAACA
AGGAAGGGGAAAAGAAGCGTGCGTACTTAACGTTAGAGGAGCTTCGCCAG
TTGCCTGACAATACAAATACTTACAAATCTATAGGGAGAACGTTTGTTCT
AGAGCCGAAGTCAGTTCTAATGAATGAACAAGAGCAGAGACTCAAGGATA
GTGAATCTGCAATTGCCGCATTGCAGGCCTCAAAGGAATACTTGGAGAAG
CAGAAAGCTGAGGTGGAGAGCAATTTGGCAGAGCTGCTACAGCAAGACCC
AGGTCTTGCACAGCAGATTATGTCCATGAGTGTAATGTAACTTTTTCAAT
GACAAAAGTTTCCTGAACTGTTGTTGGTCTTTTTTTGGTTTGAATGATAA
CTGGAATGTGATAATCCTGTGTTTTTGCAATGAGCTTTATTTGGCTCATC
ATAGTCAATATAATGTTCAAGTCGAAATTTTTTTTACAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
back to top