CK933204

Overview
NameCK933204
Unique NameCK933204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11494 contig Csv1_Contig11494:20..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.430e-47
Identity = 101/130 (77.69%), Postives = 110/130 (84.62%), Query Frame = 2
Query:   98 MASVVLRNPNSKRIVPFSSQIYSCCRGSL----SISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 475
            MASVVLRNP+SKR+VPFSSQIYS C  S+    SIS +   ++ S++  G S   +WRSMATFTR K HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA
Sbjct:    1 MASVVLRNPSSKRLVPFSSQIYSRCGASVTSSYSISHSIGGDDLSSSTFGTS--SFWRSMATFTRNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 128          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.178e-25
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 2
Query:  260 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            S   F RTK HVN+GTIGHVDHGKTTLTAAIT VLA+EGKA A  +DEIDKAPEEK+RGITI TAHVEYET
Sbjct:    2 SKEKFERTKPHVNIGTIGHVDHGKTTLTAAITMVLAKEGKASATKYDEIDKAPEEKERGITINTAHVEYET 72          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.539e-25
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 2
Query:  272 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            F RTK HVN+GTIGHVDHGKTTLTAAIT +LA+EGKAKA  ++EIDKAPEEK+RGITI TAHVEYET
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITTILAKEGKAKAFNYEEIDKAPEEKERGITINTAHVEYET 72          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.428e-25
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 2
Query:  266 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +GKA+ +A+D+IDKAPEE++RGITI TAHVEYET
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYET 72          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.428e-25
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 2
Query:  266 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +GKA+ +A+D+IDKAPEE++RGITI TAHVEYET
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYET 72          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 2
Query:  272 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            F RTK HVN+GTIGHVDHGKTTLTAAITKVLAE+GKA+ +A+D IDKAPEE++RGITI T+HVEYET
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITKVLAEKGKAQFMAYDAIDKAPEERERGITINTSHVEYET 72          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPS (Elongation factor Tu OS=Clostridium perfringens (strain SM101 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  260 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 475
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETA 73          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPE (Elongation factor Tu OS=Clostridium perfringens GN=tufA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  260 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 475
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETA 73          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_CLOP1 (Elongation factor Tu OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.478e-25
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  260 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 475
            S A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA+ G A+A  +DEIDKAPEEK+RGITI TAHVEYETA
Sbjct:    2 SKAKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQAGGAEAFKYDEIDKAPEEKERGITINTAHVEYETA 73          
BLAST of CK933204 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.848e-25
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 2
Query:  266 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 472
            A F RTK HVN+GTIGHVDHGKTTLTAAIT VLA++GKA+A A+D+ID APEE++RGITI+TAHVEYET
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGKAEARAYDQIDAAPEERERGITISTAHVEYET 72          
The following BLAST results are available for this feature:
BLAST of CK933204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTM_ARATH1.430e-4777.69Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_CLOK51.178e-2580.28Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_CLOAB1.539e-2582.09Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CALS83.428e-2579.71Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD3.428e-2579.71Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_SYMTH4.478e-2580.60Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_CLOPS4.478e-2577.78Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_CLOPE4.478e-2577.78Elongation factor Tu OS=Clostridium perfringens GN... [more]
EFTU_CLOP14.478e-2577.78Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_GEOTN5.848e-2578.26Elongation factor Tu OS=Geobacillus thermodenitrif... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_C06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933204 ID=CK933204; Name=CK933204; organism=Citrus sinensis; type=EST; length=477bp
GGGGAACACAGTACACATATCCGCCCCTATCACTGAGCGAGGTTTTACAT
ACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCGGAATCAATG
GCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGTGCCGTTTTC
ATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCTCCGACGCTT
TCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCTGTTAACCCC
TGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCACGTGAATGT
GGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTACTGCTGCGA
TTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATTGCCTTTGAT
GAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAAC
GGCCCATGTAGAGTATGAGACTGCTAA
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