CK933214

Overview
NameCK933214
Unique NameCK933214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:805..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933214 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 60/134 (44.78%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   99 YFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 491
            YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  256 YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of CK933214 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = 3
Query:   66 PFVPTADDT-PV---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 470
            PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  238 PFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
BLAST of CK933214 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 63/159 (39.62%), Postives = 82/159 (51.57%), Query Frame = 3
Query:   12 NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 485
            NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  252 NQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
The following BLAST results are available for this feature:
BLAST of CK933214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RA212_ARATH1.186e-1744.78Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ1.712e-1641.13Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH2.236e-1639.62Ethylene-responsive transcription factor RAP2-2 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004289_B05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933214 ID=CK933214; Name=CK933214; organism=Citrus sinensis; type=EST; length=811bp
GGGCACAAGTGAATCAGTATGGATATATGGGCTCCTTCCCTGATGATGGA
GAACTAGGATTCAAACCCTTTGTGCCAACAGCTGATGATACTCCTGTGTA
CTTCAACTCTGACCAAGGCAGTAACTCCTTTGATTGTTCTGACTTTGGCT
GGGGAGAACAGGCACCAAAGACTCCTGAAATCTCATCTGTTTTGGAAGCT
ACCCCTGAAGTTGATGAATCTCAGTTTGTGGATGCGGTTGCAAACCCGAT
GAAGAAGCTGAAATCTAACTCTGAGAATGCTGTGCCTGTTCAGGATAACA
ATGGAAAGTCTCTGTCTGATGAGCTTTTGGCTTTTGACAATCAGGTGAAG
TTCTTGCCAATGCCGTATCCTGAAGGAAGCTGGGAGGCCTCCCTCGATGC
CTTCCTCAATGGTGACAACACCCAGGATGGTGGAAACTTGATGAACCTTT
GGAGCTTTGATGACTTCCCTTCTACCCTAGGGGGAGTGTATTGAGCAAAC
TTTCATGTGCTTGCTAGTTTTGTAAATAAGGCTATATGTTACTTTGAGGA
CTGGTTGTCTATCTGTGTTGGAGATGCAGTGCTTAATTGTTGGACATGCT
TAAGCCGAGCCATGTGTGGAGATTGCCCTCAGGAGCTTTCAGTAGATTCT
TAGTATATAGGTGTTTAGGTTCCTTTTAACCTATGAGACTTGAAACATTT
TGAACATTTTGCAATCTAGTGACTGTATGGATGATTATGTGTGATTTGTG
ATCAAAAACTGAACCGGATGATTGTAATCCTGGTTAGAAAAAAAAAAAAA
AAAAAAAAAAA
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