CK933232

Overview
NameCK933232
Unique NameCK933232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933232_ssr31 microsatellite CK933232_ssr31:31..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 6.368e-95
Identity = 153/237 (64.56%), Postives = 182/237 (76.79%), Query Frame = 1
Query:  187 KNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            ++ VN +    K + FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SYV RD            +F++WF WPLYWVAQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PEK+Y  L  STR+LR++            WYRSPGK+GSHFNPYSSLF+P ERK +  ST CW+ M   LVYLSF+  P+T+ K+YGVPY
Sbjct:    8 RSNVNGDSGARKEEGFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKLYKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPY 244          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.494e-93
Identity = 154/233 (66.09%), Postives = 177/233 (75.97%), Query Frame = 1
Query:  205 NGVVEKGDSFD--PAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            NG  +KG SFD  P+APPPFKI EIRA+IPKHCWVKNPWRSLSYVLRD            HF+ W  W +Y   QGTMFWA+FVLGHDCGHGSFS+SPLLNS VGHILHSSILVPY+GWRISHRTHHQNHG++E DESWVP+ EKIY  LDS TR++RF+            + RSPGK+GSHFNPYS+LF P ERK + IST CW  MF LL+YLSF+  P+ + KLYG+PY
Sbjct:   14 NGYQQKGSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPY 246          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 2.265e-92
Identity = 158/232 (68.10%), Postives = 172/232 (74.14%), Query Frame = 1
Query:  205 NGVVEKGDS-FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            NG  E   S FDP APPPFKI +IRAAIPKHCW K+  RSLSYVLRD             FN+WFFWPLYW AQGTMFWA+FVLGHDCGHGSFS S  LNSFVGHILHS ILVPYNGWRISHRTHHQNHG+VE DESWVP+ EK+Y  LD  TR+LR+S            W RSPGK+GSHFNPYS+LFSPGERK VV ST CW  +  +L+YLS   GPI M KLYGVPY
Sbjct:   12 NGAREGDQSYFDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKEGSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPY 243          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.590e-92
Identity = 153/243 (62.96%), Postives = 181/243 (74.49%), Query Frame = 1
Query:  184 LKNEVNANGVVEKGDS-----FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            +    N NG    GD      FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SYV+RD            + ++WF WPLYW AQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PE++Y KL  STR+LR++             YRSPGK+GSHFNPYSSLF+P ERK +  ST CW+ MF  L+ LSFVFGP+ + K+YGVPY
Sbjct:    5 MDQRTNVNGDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPY 247          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 6.168e-90
Identity = 150/235 (63.83%), Postives = 172/235 (73.19%), Query Frame = 1
Query:  205 NGVVE----KGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            NG+V     KG+ FD  APPPF + +IRAAIPKHCWVKNPWRS+SYVLRD            +FN W  WPLYW  QGTMFWA+FVLGHDCGHGSFS +P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKI+  LD+ T+ LRFS            W RSPGK GSHF+P S LF P ERK ++ STACWT M  LLVYL+F  GP+ M KLYG+PY
Sbjct:   89 NGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPY 323          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 3.061e-89
Identity = 148/239 (61.92%), Postives = 172/239 (71.97%), Query Frame = 1
Query:  187 KNEVNANG--VVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            + E N  G  V+  G+ FDP APPPFK+ +IR AIPKHCWVK+PWRS+ YV+RD            +FN W  WPLYW AQ TMFWA+FVLGHDCGHGSFS  P LNS VGHILHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKIY  LD++T+ LRF+            W RSPGK GSHF+P S LF P E+K V+ ST CWT M  LLV LSFV GP+ + KLYG+PY
Sbjct:   75 EEEENKEGERVINGGEEFDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPFPLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPY 313          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.384e-88
Identity = 146/222 (65.77%), Postives = 164/222 (73.87%), Query Frame = 1
Query:  232 FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            FDP APPPF + +IRAAIPKHCWVKNPW+SLSYV+RD            + N W  WPLYW+AQGTMFWA+FVLGHDCGHGSFS  P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW PM EKIY+ LD  TR  RF+            W RSPGK GSH++P S LF P ERK V+ STACWT M  LLV L+F  GPI M KLYG+PY
Sbjct:   88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPY 309          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.847e-88
Identity = 143/227 (63.00%), Postives = 166/227 (73.13%), Query Frame = 1
Query:  217 EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            E  + FDP APPPF + +IRAAIPKHCWVKNPW S+SYV+RD            +FN W  WPLYW AQGTMFWA+FVLGHDCGHGSFS  P LNS  GH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+PE IY  L+ +T++ RF+            W RSPGK GSH++P S LF P E+K V+ STACWT M  LLV L+FV GPI M KLYG+PY
Sbjct:   76 EDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPY 302          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.887e-87
Identity = 147/232 (63.36%), Postives = 170/232 (73.28%), Query Frame = 1
Query:  205 NGVV-EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            NGV  EK   FDP APPPF + +IRAAIPKHCWVK+PWRS+SYV+RD            + N W  WPLYW AQGTMFWA+FVLGHDCGHGSFS +  LNS VGH+LHSSILVPY+GWRISHRTHHQ+HG+ E+DESW P+PEK++  LD+ TR+LRF+            + RSPGK GSHF+P S LF P ERK V+ STACW  M GLLV L FV GPI + KLYGVPY
Sbjct:   86 NGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPY 317          
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.422e-86
Identity = 146/231 (63.20%), Postives = 167/231 (72.29%), Query Frame = 1
Query:  205 NGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897
            N   E    FDP+APPPF++ EIR  IPKHCWVK+P RSLSYV+RD            H ++W F+PLYW  QGTMFWAIFVLGHDCGHGSFS+S LLN+ VGHILHS+ILVPY+GWRISH+THHQNHGNVE DESWVPMPEK+Y+K+  ST+ LR+               RSPGK GSHFNPYS LF P ERK VV ST CWT M  LL+YL   FG + MFK+YG PY
Sbjct:   13 NSFNEMEFEFDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPLLAYPMYLMKRSPGKSGSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPY 243          
The following BLAST results are available for this feature:
BLAST of CK933232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_BRANA6.368e-9564.56Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN3.494e-9366.09Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU2.265e-9268.10Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH6.590e-9262.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO6.168e-9063.83Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SESIN3.061e-8961.92Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_ARATH3.384e-8865.77Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH9.847e-8863.00Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SOYBN4.887e-8763.36Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_TOBAC1.422e-8663.20Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_H10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933232 ID=CK933232; Name=CK933232; organism=Citrus sinensis; type=EST; length=897bp
GGGGGCATTGGCAGAATCTTTGGCCTTTGCATATATATATTCGCATTTAG
CTGGCCTTTGCTTTGCTCCTATATCAACATTTTATTTTACTACACAACAA
CAGCTAGCAGCGGCTGAGACTGAGAGAGAAAGCTCATTTCACTTCTCGGT
TTCTTTGCTTGCTGCTGCAATGGAGAAAGAAAGCTCAAGAATGAAGTGAA
TGCCAATGGGGTTGTTGAGAAAGGAGATTCCTTTGACCCAGCAGCTCCTC
CTCCATTCAAGATTGGCGAGATCCGTGCTGCCATTCCAAAGCATTGCTGG
GTCAAGAATCCATGGAGGTCTTTGAGCTATGTACTCAGAGATTTGCTTGT
GGTTCTTGCATTGCTAGCTGCTGCTACTCACTTCAACACTTGGTTCTTTT
GGCCTCTCTATTGGGTTGCTCAAGGAACCATGTTCTGGGCTATCTTTGTT
CTTGGCCATGACTGTGGCCATGGAAGCTTTTCGGAAAGTCCTTTGCTGAA
CAGCTTTGTGGGACACATCCTGCATTCGTCAATTCTTGTACCTTACAACG
GATGGAGAATTAGCCACAGAACACATCACCAAAACCATGGCAACGTTGAA
CATGATGAATCTTGGGTGCCGATGCCTGAGAAGATTTACAGTAAATTGGA
TTCTAGTACAAGGATTCTGAGATTCTCATTGCCTTTACCCATGTTAGCAT
ACCCTGCATATCTGTGGTACCGAAGTCCTGGAAAGGATGGATCTCATTTC
AATCCTTACAGCAGTTTGTTTTCGCCAGGGGAGAGAAAAGCAGTGGTGAT
TTCAACTGCTTGTTGGACTTTCATGTTTGGCTTGCTGGTGTATTTATCCT
TTGTATTTGGTCCTATCACAATGTTTAAGCTTTATGGTGTTCCTTAC
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