CK933232
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 347.436 bits (890), Expect = 6.368e-95 Identity = 153/237 (64.56%), Postives = 182/237 (76.79%), Query Frame = 1 Query: 187 KNEVNANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 ++ VN + K + FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SYV RD +F++WF WPLYWVAQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PEK+Y L STR+LR++ WYRSPGK+GSHFNPYSSLF+P ERK + ST CW+ M LVYLSF+ P+T+ K+YGVPY Sbjct: 8 RSNVNGDSGARKEEGFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKLYKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPY 244
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 3.494e-93 Identity = 154/233 (66.09%), Postives = 177/233 (75.97%), Query Frame = 1 Query: 205 NGVVEKGDSFD--PAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 NG +KG SFD P+APPPFKI EIRA+IPKHCWVKNPWRSLSYVLRD HF+ W W +Y QGTMFWA+FVLGHDCGHGSFS+SPLLNS VGHILHSSILVPY+GWRISHRTHHQNHG++E DESWVP+ EKIY LDS TR++RF+ + RSPGK+GSHFNPYS+LF P ERK + IST CW MF LL+YLSF+ P+ + KLYG+PY Sbjct: 14 NGYQQKGSSFDFDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVPLTEKIYKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKEGSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPY 246
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 2.265e-92 Identity = 158/232 (68.10%), Postives = 172/232 (74.14%), Query Frame = 1 Query: 205 NGVVEKGDS-FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 NG E S FDP APPPFKI +IRAAIPKHCW K+ RSLSYVLRD FN+WFFWPLYW AQGTMFWA+FVLGHDCGHGSFS S LNSFVGHILHS ILVPYNGWRISHRTHHQNHG+VE DESWVP+ EK+Y LD TR+LR+S W RSPGK+GSHFNPYS+LFSPGERK VV ST CW + +L+YLS GPI M KLYGVPY Sbjct: 12 NGAREGDQSYFDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVPLTEKVYKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKEGSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPY 243
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 6.590e-92 Identity = 153/243 (62.96%), Postives = 181/243 (74.49%), Query Frame = 1 Query: 184 LKNEVNANGVVEKGDS-----FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 + N NG GD FDP+A PPFKIG+IRAAIPKHCWVK+P RS+SYV+RD + ++WF WPLYW AQGT+FWAIFVLGHDCGHGSFS+ PLLNS VGHILHS ILVPY+GWRISHRTHHQNHG+VE+DESWVP+PE++Y KL STR+LR++ YRSPGK+GSHFNPYSSLF+P ERK + ST CW+ MF L+ LSFVFGP+ + K+YGVPY Sbjct: 5 MDQRTNVNGDPGAGDRKKEERFDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPY 247
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 330.872 bits (847), Expect = 6.168e-90 Identity = 150/235 (63.83%), Postives = 172/235 (73.19%), Query Frame = 1 Query: 205 NGVVE----KGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 NG+V KG+ FD APPPF + +IRAAIPKHCWVKNPWRS+SYVLRD +FN W WPLYW QGTMFWA+FVLGHDCGHGSFS +P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKI+ LD+ T+ LRFS W RSPGK GSHF+P S LF P ERK ++ STACWT M LLVYL+F GP+ M KLYG+PY Sbjct: 89 NGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIFKSLDNVTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPY 323
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 3.061e-89 Identity = 148/239 (61.92%), Postives = 172/239 (71.97%), Query Frame = 1 Query: 187 KNEVNANG--VVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 + E N G V+ G+ FDP APPPFK+ +IR AIPKHCWVK+PWRS+ YV+RD +FN W WPLYW AQ TMFWA+FVLGHDCGHGSFS P LNS VGHILHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+ EKIY LD++T+ LRF+ W RSPGK GSHF+P S LF P E+K V+ ST CWT M LLV LSFV GP+ + KLYG+PY Sbjct: 75 EEEENKEGERVINGGEEFDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTLPFPLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPY 313
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 3.384e-88 Identity = 146/222 (65.77%), Postives = 164/222 (73.87%), Query Frame = 1 Query: 232 FDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 FDP APPPF + +IRAAIPKHCWVKNPW+SLSYV+RD + N W WPLYW+AQGTMFWA+FVLGHDCGHGSFS P LNS VGH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW PM EKIY+ LD TR RF+ W RSPGK GSH++P S LF P ERK V+ STACWT M LLV L+F GPI M KLYG+PY Sbjct: 88 FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPY 309
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 9.847e-88 Identity = 143/227 (63.00%), Postives = 166/227 (73.13%), Query Frame = 1 Query: 217 EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 E + FDP APPPF + +IRAAIPKHCWVKNPW S+SYV+RD +FN W WPLYW AQGTMFWA+FVLGHDCGHGSFS P LNS GH+LHSSILVPY+GWRISHRTHHQNHG+VE+DESW P+PE IY L+ +T++ RF+ W RSPGK GSH++P S LF P E+K V+ STACWT M LLV L+FV GPI M KLYG+PY Sbjct: 76 EDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPY 302
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 4.887e-87 Identity = 147/232 (63.36%), Postives = 170/232 (73.28%), Query Frame = 1 Query: 205 NGVV-EKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 NGV EK FDP APPPF + +IRAAIPKHCWVK+PWRS+SYV+RD + N W WPLYW AQGTMFWA+FVLGHDCGHGSFS + LNS VGH+LHSSILVPY+GWRISHRTHHQ+HG+ E+DESW P+PEK++ LD+ TR+LRF+ + RSPGK GSHF+P S LF P ERK V+ STACW M GLLV L FV GPI + KLYGVPY Sbjct: 86 NGVEHEKLPEFDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRFTAPFPLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPY 317
BLAST of CK933232 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 1.422e-86 Identity = 146/231 (63.20%), Postives = 167/231 (72.29%), Query Frame = 1 Query: 205 NGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDXXXXXXXXXXXTHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSXXXXXXXXXXXXWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 897 N E FDP+APPPF++ EIR IPKHCWVK+P RSLSYV+RD H ++W F+PLYW QGTMFWAIFVLGHDCGHGSFS+S LLN+ VGHILHS+ILVPY+GWRISH+THHQNHGNVE DESWVPMPEK+Y+K+ ST+ LR+ RSPGK GSHFNPYS LF P ERK VV ST CWT M LL+YL FG + MFK+YG PY Sbjct: 13 NSFNEMEFEFDPSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPLLAYPMYLMKRSPGKSGSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPY 243 The following BLAST results are available for this feature:
BLAST of CK933232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933232 ID=CK933232; Name=CK933232; organism=Citrus sinensis; type=EST; length=897bpback to top |