CK933242

Overview
NameCK933242
Unique NameCK933242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933242_ssr154 microsatellite CK933242_ssr154:154..165. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1382 contig Csv1_Contig1382:148..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 303
            QFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E+
Sbjct:   35 QFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEK 134          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 303
            QFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E+
Sbjct:   35 QFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEK 134          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 72/97 (74.23%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGRIGR+LKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK+
Sbjct:   31 QFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 70/100 (70.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 303
            QFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E+
Sbjct:   38 QFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEK 137          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 70/100 (70.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 303
            QFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E+
Sbjct:   38 QFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAEK 137          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.968e-33
Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNE 300
            QFPVGRIGRFLKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK  +
Sbjct:   33 QFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEK 131          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.475e-33
Identity = 71/97 (73.20%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKKT
Sbjct:   33 QFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 129          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 70/100 (70.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 303
            QFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRH+ LAVRNDEELGKLL GVT A GGVLPNINPVLLPKKT E+
Sbjct:   32 QFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKTAEK 131          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGRIGR+LK+GRYSQR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT
Sbjct:   36 QFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
BLAST of CK933242 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    4 QFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 294
            QFPVGRIGR+LK+GRYSQR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT
Sbjct:   36 QFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
The following BLAST results are available for this feature:
BLAST of CK933242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 236
Match NameE-valueIdentityDescription
H2A6_ORYSJ2.913e-3371.00Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI2.913e-3371.00Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A1_SOLLC2.913e-3374.23Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A5_ORYSJ3.804e-3370.00Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI3.804e-3370.00Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A_EUPES4.968e-3372.73Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A2_MEDTR8.475e-3373.20Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_PETCR1.888e-3270.00Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A4_ORYSJ1.888e-3271.13Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI1.888e-3271.13Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933242 ID=CK933242; Name=CK933242; organism=Citrus sinensis; type=EST; length=557bp
GGGCAATTCCCGGTAGGTAGAATCGGGCGTTTCTTGAAGAAGGGAAGATA
TTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCGCTGTGCTCG
AGTACCTAGCTGCTGAAGTATTGGAGTTGGCTGGGAACGCGGCACGTGAC
AACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGCGGTGAGGAA
TGACGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTGCAAGCGGCG
GCGTTTTGCCTAATATCAACCCAGTACTGTTGCCAAAGAAGACTAATGAA
CGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAAGTCCCCAAA
GAAAGCCTAGATTAGTTGTATCTTGAGTACTACCCGTGTGTAATGTTCAG
TCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGCTGTGTGTA
TGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATTGAAACAAGTTGTTTT
TTTGTAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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