CK933246

Overview
NameCK933246
Unique NameCK933246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.025e-73
Identity = 143/187 (76.47%), Postives = 158/187 (84.49%), Query Frame = 2
Query:  119 MALQLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 679
            M  Q+WETLKE ITAYTGLSPAAFFTV+AL +A+Y V+SG F S + H + RS E + Q EPLPPPVQLG+ITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEY+FMSKYVKVG+I+      DG    ES+EP E
Sbjct:    1 MVQQIWETLKETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVH-RPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQK----KDGEGK-ESSEPSE 181          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.774e-69
Identity = 133/190 (70.00%), Postives = 152/190 (80.00%), Query Frame = 2
Query:  119 MALQLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGS---SDNHHQQRSREYEEQMEPLPPPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSIKSTVPVTDGASSGESTEPKE 679
            MAL+LW+TLKEAI AYTGLSP  FFT +AL +AIY V+SG F S     N HQ+     +E+  P+P PVQ+G+ITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEY+FMSKY KVG++K      + AS  E TE  E
Sbjct:    1 MALELWQTLKEAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVE 190          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 48/99 (48.48%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  329 KITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSIKS 625
            + T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE +F +KY  VG + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  311 PPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYRFMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  311 PPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYRFMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  311 PPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYR-FMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D   R + +KY  VG     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  308 PPPVQLGK---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSI 619
            PPP+   K    T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   62 PPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  176 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSI 619
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++    T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  176 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGKITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSI 619
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++    T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
BLAST of CK933246 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  308 PPPVQLGK---ITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYRFMSKYVKVGSI 619
            PPP+   K    T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   62 PPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
The following BLAST results are available for this feature:
BLAST of CK933246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH2.025e-7376.47Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH1.774e-6970.00Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH2.125e-2248.48Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT2.872e-1945.61Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE3.176e-1843.86Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
NENF_BOVIN1.576e-1742.98Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_RAT2.688e-1743.64Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG4.585e-1733.11Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN4.585e-1733.11Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE7.822e-1742.73Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_H05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933246 ID=CK933246; Name=CK933246; organism=Citrus sinensis; type=EST; length=697bp
GGGGACAGCGAGACTTTAACAGTACCAACAATTTTCCGCCAATTTAAGAC
CAAACCCCTACAGACTCTGAGTGGATAATACCAAAGGGGACCGGGAAAAA
AAAATCTTGACCTCCGTGATGGCTCTGCAACTATGGGAGACTCTAAAGGA
GGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTTTTTTACAGTTG
TTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAATGTTTGGTTCG
TCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGAGGAACAGATGGA
GCCTCTGCCACCGCCTGTTCAGCTAGGCAAGATTACCGAGGAGGAGCTCA
AACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTCATGGCCATCAAG
AGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTATGGACCTGGTGG
GCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGGCCCTTGCCAAGA
TGTCTTTTGAGGAAAAAGATTTAACTGGTGATATCTCTGGTCTTGGTCCA
TTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAGGTTCATGAGCAAGTA
TGTTAAGGTTGGATCTATCAAGTCGACAGTTCCAGTAACAGATGGAGCCT
CCTCTGGTGAATCCACTGAGCCTAAAGAAGGAGTTGTTGATACACCT
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