CK933254

Overview
NameCK933254
Unique NameCK933254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933254_ssr41 microsatellite CK933254_ssr41:41..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1550 contig Csv1_Contig1550:1..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 3.602e-122
Identity = 210/251 (83.67%), Postives = 233/251 (92.83%), Query Frame = 3
Query:  153 MVISTTET-DSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            MV++TT   DS E L+ TFASRYV+  +P+FKMP  SMPKEAAYQ++NDELMLDGNPRLNLASFV+TWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNM+AHLF+ PV DD+TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP+DKPNIVTGANVQVCWEKFARYFE ELKEVKL+EGYYVM+P KAVE+VDENTICVAAILGSTLTGEFEDVKL ++LLTKKN+E GW+TPIHVDAASGGF
Sbjct:    1 MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWETPIHVDAASGGF 251          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 6.793e-121
Identity = 211/250 (84.40%), Postives = 227/250 (90.80%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            MV+S T + S   ++STFASRYVR ++PRFKMPDNS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ D +TAVGVGTVGSSEAIMLAGLAFKRKWQ K K QGKP DKPNIVTGANVQVCWEKFARYFE ELKEVKL EGYYVM+P KAVE+VDENTICVAAILGSTL GEFEDVK  +DLL +KN+E GWDTPIHVDAASGGF
Sbjct:    1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGF 250          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 431.409 bits (1108), Expect = 3.371e-120
Identity = 207/250 (82.80%), Postives = 230/250 (92.00%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            MV+S   ++S   ++STFASRYVR ++PRFKMP+NS+PKEAAYQ+INDELMLDGNPRLNLASFVTTWMEPECDKL+M+SINKNYVDMDEYPVTTELQNRCVNMIAHLFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKP DKPNIVTGANVQVCWEKFARYFE ELKEVKL EGYYVM+P +AV++VDENTICVAAILGSTL GEFEDVKL +DLL +KN+E GWDTPIHVDAASGGF
Sbjct:    1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGF 250          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 3.056e-113
Identity = 196/250 (78.40%), Postives = 220/250 (88.00%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            MV++ T T+   +  + F SRYVR  +P++++ +NS+PK+AAYQ+I DELMLDGNPRLNLASFVTTWMEPECDKL+M SINKNYVDMDEYPVTTELQNRCVN+IA LFN P+ + +TAVGVGTVGSSEAIMLAGLAFKRKWQ KRK +GKPYDKPNIVTGANVQVCWEKFARYFE ELKEV L EGYYVM+P KA E+VDENTICVAAILGSTL GEFEDVK  +DLL KKNEE GW+TPIHVDAASGGF
Sbjct:    1 MVLTKTATNDESVC-TMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
BLAST of CK933254 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.057e-57
Identity = 111/244 (45.49%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFEAELKEVKLEEGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLSHDLLTKKNEEXGWDTPIHVDAASGGF 902
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY++ EL+E+ +  G   M+P + +E  DENTI V    G T TG +E  +  HD L K   + G D  +H+DAASGGF
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 249          
The following BLAST results are available for this feature:
BLAST of CK933254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_SOLLC3.602e-12283.67Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY6.793e-12184.40Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH3.371e-12082.80Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH3.056e-11378.40Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCEB_SHIFL4.057e-5745.49Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI4.057e-5745.49Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO574.057e-5745.49Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL4.057e-5745.49Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI4.057e-5745.49Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL64.057e-5745.49Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_G07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933254 ID=CK933254; Name=CK933254; organism=Citrus sinensis; type=EST; length=904bp
GGGGGAAGAGTGAAGAGCTGAGTTGCCATCAAAAGTCAAAACTCACTCAC
TCACTCACTCTCAATCACTCTCTTTCCTTTGTATCTCAGCAATTTCTATT
CATTTCTCTCAGACTCAAGAGTCTCTCTTCTCTGCACAAAACAAAAACAA
AAATGGTGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAACTCC
ACATTTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCC
AGATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGC
TGATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACT
TGGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAA
CTATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGT
GTGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAG
ACTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGC
TGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCA
AACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGC
TGGGAGAAATTTGCGAGGTACTTTGAGGCTGAGCTGAAGGAGGTGAAACT
GGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAG
ATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGA
GAATTTGAGGATGTTAAGCTTTCTCATGACCTCCTCACCAAAAAGAATGA
GGAGNCCGGTTGGGACACCCCCATTCATGTTGATGCTGCTAGCGGCGGAT
TTAT
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