CK933264

Overview
NameCK933264
Unique NameCK933264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.695e-43
Identity = 88/121 (72.73%), Postives = 94/121 (77.69%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            M +K  K RKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAM TTDVRVDVKLNK +WS                  ND+EDAKEE YSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct:    1 MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 85/115 (73.91%), Postives = 93/115 (80.87%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIRKFA+KAM T DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP+EGL GLGTKVI+EED
Sbjct:    5 KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            KGRKEEVVTREYTINLHKRLH CTFKKKAP AIKEIRKFAQKAM T DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVAEIP++GLKGLGTK+I++ED
Sbjct:    6 KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.400e-41
Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIRKFA+K M T DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP+EGL GLGTK+I+EED
Sbjct:    5 KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 85/116 (73.28%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   78 GKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            GKGRKEEVVTREYTINLH+RLH CTFKKKAP AIKEIRKFA KAM T DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP+EGL GLGTKVI+EE+
Sbjct:    4 GKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40
Identity = 84/121 (69.42%), Postives = 93/121 (76.86%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            MVEK GK R+ EV TREYTINLH+RLHGCTFKK APKA+KEIRKFAQKAM TTDVR+DVKLNK VWS                  NDEEDAK+E YS+VTVAE+P EGL GLGTK+I+EED
Sbjct:    1 MVEK-GKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.021e-40
Identity = 86/121 (71.07%), Postives = 94/121 (77.69%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEED 425
            MVEK  KGRKEEVVTREYTINLHKRLHGCTFKKKAP AIKEIRKFAQKAM T DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVA+IP+  LKGLG ++I+E+D
Sbjct:    1 MVEKT-KGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.661e-26
Identity = 62/114 (54.39%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDEE 422
            K R  E+VTREYTINLHKRLHG  FKK+AP+A+KEI+KFA K M TTDVRVD +LNK VW+                  ND+EDAKE+ Y+LVT   +P    KGL T+ +D E
Sbjct:    8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQNVDAE 119          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.701e-26
Identity = 64/113 (56.64%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVIDE 419
            K R +E VTREYTI+L KRLH  +FKK APKA+KEIRKFA K M T+DVR+DVKLNK VWS                  ND+EDAKEE YS VTVAE   +  KG GT V+ +
Sbjct:    5 KSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115          
BLAST of CK933264 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.344e-25
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMRTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPSEGLKGLGTKVID 416
            E+ GK    EVVTREYT+NLHKRLHG  FKK+AP+AIKEIRKFA+K M T DVRVD +LNK +WS                  ND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:    7 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
The following BLAST results are available for this feature:
BLAST of CK933264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PERFR9.695e-4372.7360S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL313_ARATH6.284e-4273.9160S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_NICGU1.072e-4173.9160S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL312_ARATH1.400e-4173.0460S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL311_ARATH1.828e-4173.2860S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PICMA1.185e-4069.4260S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_PANGI2.021e-4071.0760S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_CYAPA1.661e-2654.3960S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_CHLRE3.701e-2656.6460S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_SPOFR5.344e-2550.8660S ribosomal protein L31 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_E08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933264 ID=CK933264; Name=CK933264; organism=Citrus sinensis; type=EST; length=658bp
GGGGAGCAGCCGCAGACTCAGAGTGTAGAAGCTCGAGAGCAGAAAAAGAA
GAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAAAAGAAGAGGT
CGTCACTCGCGAATATACCATTAATCTCCACAAACGCTTGCATGGCTGCA
CCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGGAAGTTTGCT
CAAAAAGCCATGCGGACAACTGATGTTAGGGTGGATGTGAAGCTCAACAA
GCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAATTCGTGTTC
GCGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAAGAGTTCTAC
TCTCTCGTCACTGTTGCCGAGATCCCTTCAGAAGGACTCAAGGGGTTGGG
CACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTGTTTAGCTAA
GGAACTCCAAATTTTGGCTATAATTTTATCTTATTCAGTTGCTCTTTTGG
TTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGGTTTCGTGAA
CGTATTGTGTTTTATGCATTTACCCTGTTTAAGATTTCTGATACTTCATT
CATTCACGCACGGATATGTTTTTATTTTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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