CK933276

Overview
NameCK933276
Unique NameCK933276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.566e-94
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.857e-93
Identity = 166/174 (95.40%), Postives = 171/174 (98.28%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.037e-93
Identity = 167/174 (95.98%), Postives = 170/174 (97.70%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.914e-92
Identity = 164/174 (94.25%), Postives = 171/174 (98.28%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.500e-92
Identity = 165/198 (83.33%), Postives = 176/198 (88.89%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIXXXXXXXXXXXXXXXXXXXXCSIL 725
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAI                    CSIL
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKSQKGCSIL 198          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 7.273e-92
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 9.499e-92
Identity = 165/174 (94.83%), Postives = 168/174 (96.55%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 1.241e-91
Identity = 162/174 (93.10%), Postives = 170/174 (97.70%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.764e-91
Identity = 161/174 (92.53%), Postives = 170/174 (97.70%), Query Frame = 3
Query:  132 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFDAAI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAI 174          
BLAST of CK933276 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.610e-91
Identity = 163/172 (94.77%), Postives = 168/172 (97.67%), Query Frame = 3
Query:  138 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 653
            ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFDAAI
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAI 173          
The following BLAST results are available for this feature:
BLAST of CK933276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA1.566e-9497.13Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ARATH3.857e-9395.40Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC5_ORYSJ5.037e-9395.98Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU1.914e-9294.25Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC3_ARATH2.500e-9283.33Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RHO1_PEA7.273e-9294.25Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC6_ORYSJ9.499e-9294.83Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC11_ARATH1.241e-9193.10Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC1_ARATH2.764e-9192.53Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC4_ARATH3.610e-9194.77Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_D12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933276 ID=CK933276; Name=CK933276; organism=Citrus sinensis; type=EST; length=811bp
GGGGCCCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTT
GTTCTGAGTTAGGGCTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATA
AAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCA
TAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTC
ATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATT
TGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTG
GGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTG
AGCTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAA
GGCCAGCTATGAAAATGTTGCTAAGAAATGGATCCCTGAGTTGAGGCATT
ATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGG
GATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCAC
GGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTG
AGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCC
ATCAAGGTGGTTCTCCAGCCGCCAAAGAACAAGAAGAAAAAGAAGAGAAA
GGCACAAAAGGCTTGCTCTATATTGTGATTCTTCAAAACAAGAGTTCTGT
GAAGGAAACGTGACCAATTCATAATTTATCCTAAATCTTACGTTCTATGT
TTTCCTCGACT
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