CK933283

Overview
NameCK933283
Unique NameCK933283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1490 contig Csv1_Contig1490:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.715e-46
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 363
            MTKR KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 363
            MTKR KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.002e-45
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 360
            MTKR KKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.687e-45
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 363
            MTKR KKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.334e-44
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 360
            M KR KK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.068e-42
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 360
            M KR KK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.764e-37
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 360
            M KR KK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.493e-36
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 360
            M KR KK GIVGKYGTRYGASLRK +KK EVSQHSK+FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 363
            M KR KK GIVGKYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CK933283 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   88 MTKRAKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 351
            M KR KK G+VGKYGTRYGASLRKQ+KKME++QH  Y C FCGK AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of CK933283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_GOSHI2.715e-4697.8360S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ3.546e-4695.6560S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ3.002e-4595.6060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH6.687e-4593.48Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH4.334e-4492.3160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA1.068e-4291.3060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU1.764e-3779.1260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA1.493e-3678.0260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST5.310e-3472.8360S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI1.889e-3170.4560S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933283 ID=CK933283; Name=CK933283; organism=Citrus sinensis; type=EST; length=601bp
GGGGGGGGTTAGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGC
TTGTTGAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAACGTG
CGAAGAAGGCCGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGT
TTGAGGAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTT
CTGCGAATTTTGCGGGAAGTACGCGGTGAAGAGGAAAGCTGTTGGCATTT
GGGGCTGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTG
AACACTGCTAGTGCTGTGACTGTGAGGAGCACAATCCGTAGGTTGAGGGA
GCAAACTGAAAGCTGAGCTTTGCCACCATTGGCTTCCTCCCGTGTCTTAG
GTGGTTTGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTG
CTTTATTTACCAATTTCATGTTTCTAGATGCAAAACAATTGGTTGTTGGA
ACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCGCTATT
TTTCCTATGAAATTATGTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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