CK933313

Overview
NameCK933313
Unique NameCK933313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.684e-43
Identity = 82/97 (84.54%), Postives = 89/97 (91.75%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            MII E NR+EI KYLF+EG C+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHY W+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.811e-43
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            MII E NRREI KYLF+EG C+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHY W+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.284e-43
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            MIIP+KNR EI KYLFQEG  YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +Y WYLTN+GIE LR YLNLPSEIVPATLKK A+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.812e-40
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            MII E NRREISKYLF+EG  +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHY W+LTNEGI+FLR YLNLPSEIVPATLKKQ KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.164e-29
Identity = 59/97 (60.82%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 387
            M++P++NR  I +YLF+EG   AKKDY+  KHP+++ +PNLQVIK MQS KS+ YV+E FAW H+ WYLTNEGIE+LR +L+LP EIVPATLK+  +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.164e-29
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            M++ +KNR  I +YLF+EG   AKKD++L KH EIDVPNL VI+ MQS  S+ YV+E F W HY WYL NEGI++LR +L+LP EIVPATLK+Q +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.962e-28
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 390
            M++P+KNR  I + LF+EG   AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+ WYLTNEGI++LR +L+LP EIVPATL++Q +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 393
            M++P+KNR  I + LF+EG   AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+ WYLTNEGI++LR YL+LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 393
            M++P+KNR  I + LF+EG   AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+ WYLTNEGI++LR YL+LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
BLAST of CK933313 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.834e-27
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  100 MIIPEKNRREISKYLFQEGACYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYCWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKPT 393
            M++P+KNR  I + LF+EG   AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+ WYLTNEGI++LR YL+LP EIVPATL++    T
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET 101          
The following BLAST results are available for this feature:
BLAST of CK933313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH3.684e-4384.5440S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH4.811e-4384.5440S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS10_ORYSJ6.284e-4384.5440S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS102_ARATH3.812e-4082.6540S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR5.164e-2960.8240S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU5.164e-2960.8240S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_ICTPU1.962e-2860.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_RAT2.834e-2757.4340S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE2.834e-2757.4340S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN2.834e-2757.4340S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_B01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933313 ID=CK933313; Name=CK933313; organism=Citrus sinensis; type=EST; length=811bp
GGGGAAAGCTAGGGTTTTGGTGCTACAGAAGCGATAAGAGTGTGAGATTT
GTTCTTCCTTGCAGCCTCTTTTCTCAATCATCACCTCTTCATCGCAATCA
TGATCATTCCAGAGAAAAACCGCCGTGAGATCTCCAAGTACCTCTTCCAA
GAGGGTGCGTGCTACGCAAAGAAAGACTACAATTTGGCAAAGCACCCAGA
AATCGATGTCCCGAATCTACAGGTGATTAAGTTGATGCAGAGCTTCAAGT
CAAAGGAGTACGTCCGCGAGACCTTTGCCTGGATGCATTATTGCTGGTAC
CTTACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCTCAATCTGCCTTC
TGAAATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGCCCACAGGTGGTC
GTCCTTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGCCCACCGCGCTTC
GATGGTGGAGAGAGAAGATTTGGTGACCGAGATGGATACCGCGGAGCTCC
ACGAGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAGCTCCTGCTGACT
ATCAGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGGTTTGGTCGTGGC
GGTGGTGGTTTTGGTGCAGGGTCTGCAAGCTCAAATCTTCCTTGAGAGAT
GAGTTCTGCATCTTGAGGGATTTAGGAATTTTGGTTACAAGATTGCTGAG
TGTATGGCAGTCTTTGTTTGATTGCTGCATTGTTTGGGACTGGTGGTTGT
GGGATTTTTTTATATATATTTAATTTTTGTTGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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