CK933320

Overview
NameCK933320
Unique NameCK933320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK933320 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.016e-57
Identity = 107/147 (72.79%), Postives = 130/147 (88.44%), Query Frame = 1 
Query:  211 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGL 651
            MAS+SD W++EYNEA+KL++DINGM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G ++K  D +NR +G+DNQG+V FQRQ+MREQDEGL
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGL 147
[Close]
BLAST of CK933320 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.016e-57
Identity = 109/147 (74.15%), Postives = 131/147 (89.12%), Query Frame = 1 
Query:  211 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGL 651
            MAS+SDSW++ YNEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D M+R TG+DNQG+VG+QRQ+MREQDEGL
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGL 146
The following BLAST results are available for this feature:
BLAST of CK933320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYP52_ARATH4.016e-5772.79Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH4.016e-5774.15Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004286_H09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933320 ID=CK933320; Name=CK933320; organism=Citrus sinensis; type=EST; length=651bp
GGGATTGGAGCTTNNNTNGCCTTTATTTTTTTATTATTATTCTACAATTC
TTGTGAAGTAAAACGAGGACGGGCCGTACAAAACCGGCAGTGTTGACGCT
AATTCCCGTTTTTTAGCTCGTTAATGCGACTTAGCTTTGCTCCATCCTAA
ACTTCTCCAATCCAATCCCTCTCTCAGTCTAGAATCCGAAATCTACCCAT
AATCTGTTCAATGGCTTCTGCTTCAGACTCGTGGATAAAGGAATACAATG
AAGCAATAAAACTGGCAGATGATATTAATGGCATGATATCAGAACGAAGT
TCGATGCCCGCGTCTGGACCTGAATCCCAGCGTCATGCATCTGCCATACG
GAGGAAGATTACCATATTAGGAACCAGATTGGATAGCTTGCAGTCCCTTT
TATCTAAGCTTCCCGGGAAGCAGCCCATTTCGGAGAAAGAGATGAATCGT
CGGAAGGACATGCTTGCTAATTTGAGATCCAAAGTGAATCAAATGGCTTC
CACGTTGAACATGTCAAACTTTGCTAATAGGGATAGCCTGCTTGGACCAG
AGATAAAGTCAGCCGATGTCATGAACCGAGCAACTGGCTTGGACAATCAG
GGCCTTGTTGGTTTTCAACGACAAATTATGAGAGAGCAAGATGAAGGGCT
T
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