CK933329

Overview
NameCK933329
Unique NameCK933329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933329 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.672e-56
Identity = 104/144 (72.22%), Postives = 115/144 (79.86%), Query Frame = 1 
Query:  391 EQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQVAKWMLSKGQGATMGTYDTLLLVFDKDHRADEAESLWNMILHTHTRSISKRLFSRMISLYDHHDMPNKIIEVF 822
            E HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP               QW RVIQ+AKWMLSKGQGATMGTYD LLL FD D RADEAESLWNMILHTHTRSI +RLF+RMI+LY HHD+ +K+IEVF
Sbjct:   82 EHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVF 225
[Close]
BLAST of CK933329 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.180e-28
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 1 
Query:  400 LWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQVAKWMLSKGQGATMGTYDTLLLVFDKDHRADEAESLWNMILHTHTRSISKRLFSRMISLYDHHDMPNKIIEVF 822
            +W+ R   G+  KA  ++  +  L N K  VYGALD + AWE EFP               +W ++IQV KWMLSKGQG TMGTY +LL    +D+R DEAE LWN +   H     ++ F++MIS+Y   DM  K+ EVF
Sbjct:   45 VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVF 185
The following BLAST results are available for this feature:
BLAST of CK933329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP322_ARATH8.672e-5672.22Pentatricopeptide repeat-containing protein At4g18... [more]
PP332_ARATH1.180e-2843.26Pentatricopeptide repeat-containing protein At4g21... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004286_G12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933329 ID=CK933329; Name=CK933329; organism=Citrus sinensis; type=EST; length=823bp
GGGGATGTTCTGAAACTCTCTCAAGCTCAAGTCTCAAGGGCTTTAGCTTT
TGGGTTTTGCCTGTAAATGTAATTGAAAACCATCTGGTAAATTGAAAATT
GTAGCTTGGAGCTTGCCCTTTCATTCTTTGTGAAGCATAATGCCGAGAAA
TGAGAGTGGGAGGTTTGAATGATTTGTCGGAGTTCATGGGTGATGGGTTT
TGGGTTTTCAAATAGCTGCAGAATTCCCCCATTGCAAACTGCGTCCGGTT
TTTCTCTTCTCACAACTAAGCTGGCAACTAGCAATCCCCACCTCAAGTGC
TTTCTCAATCAAAATAAACAACCACCAGTATCTAATTCCAATGCCAATGC
CTCAAAGAAGAACAAATTAGTAGTGAAGGTGGGAAAGAAAGAGCAACACT
TGTGGCAGAAAAGGGATTCTGCTGGGTCTGGGCAGAAGGCCCTCAATCTT
GTCAGAATTGTTTCTGAGCTTCCTAATGAGAAACATGCTGTTTATGGAGC
ACTGGATAAATGGACAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCAG
CTAAGGCTTTAAGAATTCTTAGGAAAAGGGGTCAATGGTTGCGTGTCATT
CAAGTAGCAAAATGGATGTTGAGCAAGGGTCAAGGAGCCACAATGGGAAC
ATATGACACACTTTTACTAGTATTTGACAAGGATCATAGGGCAGATGAGG
CCGAATCATTGTGGAATATGATTTTACATACGCATACTCGATCAATCTCA
AAGCGTTTGTTTTCGAGGATGATCTCTTTATACGATCATCATGACATGCC
AAATAAGATTATTGAGGTATTTG
back to top