CK933330
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.860e-69 Identity = 131/162 (80.86%), Postives = 146/162 (90.12%), Query Frame = 2 Query: 359 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 844 V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCL ALVVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SA Sbjct: 4 VVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESA 165
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 4.752e-57 Identity = 115/170 (67.65%), Postives = 127/170 (74.71%), Query Frame = 2 Query: 332 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 841 E VP LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCL ALVVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K D E + E Q+ Sbjct: 11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQT 180
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.201e-21 Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 2 Query: 410 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 826 P+ +P + P L LQ GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR + AL VLPT++LA QV +VF+A L V + GQ S A E + L ++ G+ + D++ Sbjct: 189 PISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSHSMADIV 334
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20 Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 347 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 781 K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V + ALVVLPT++LA QV VF L V L GQ S+A E L+++ Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK 303
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20 Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2 Query: 347 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 781 K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +R V + ALVVLPT++LA QV VF A L V L GQ S+A E L+++ Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK 331
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16 Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 2 Query: 338 AKKKSVPV-LP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 826 AKKK V + LP W+ P + E+ P +D L L+ AL+ M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R + ALVVLP +LALQV V + + L V L Q + DE +L+++ K G Y D++ Sbjct: 102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYYSKADIV 277
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15 Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 2 Query: 362 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 772 L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR V + A+V++PT+ L QVK FA ++ LSV SI DE L Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDEAQRL 318
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14 Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 2 Query: 344 KKSVPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 772 K VLP W+ P+ V L + +L LQ I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V L +V++PTR+L +QV F GL V GQ S+ E +L Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQL 252
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13 Identity = 55/154 (35.71%), Postives = 74/154 (48.05%), Query Frame = 2 Query: 365 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI------KRPKLEAGIC 805 PW+ +P+ S E L +D L L++ G F VQ V + GP DLCI++ TGSGKTLSY LP+V L L L+V+PTR+L Q ++ A GL V AVG +I DE E + P ++ IC Sbjct: 107 PWLANPLRASAQERRKFADLG-IDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRESLPGYVHRSEPNVDILIC 259
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_LODEL (ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus GN=DBP6 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12 Identity = 45/147 (30.61%), Postives = 79/147 (53.74%), Query Frame = 2 Query: 362 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 778 L W+ +P +++ + P P L P + L+++G + F VQV V + + P F D+ +N+ TGSGKTL+Y++PI+++L +R V + A+V++PT+ L QV+ +A L++ SI +E LI+ Sbjct: 207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLNIVSLKNDISIREESERLIE 351 The following BLAST results are available for this feature:
BLAST of CK933330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933330 ID=CK933330; Name=CK933330; organism=Citrus sinensis; type=EST; length=845bpback to top |