CK933330

Overview
NameCK933330
Unique NameCK933330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.860e-69
Identity = 131/162 (80.86%), Postives = 146/162 (90.12%), Query Frame = 2
Query:  359 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 844
            V+PWMR+PVDVS  E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCL ALVVLPTRDLALQVKDVF AIAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D+ Q L+SA
Sbjct:    4 VVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESA 165          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.752e-57
Identity = 115/170 (67.65%), Postives = 127/170 (74.71%), Query Frame = 2
Query:  332 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 841
            E      VP LPWMR+PVD+  F  CP+ HLP LDPRL   LQ MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCL ALVVLPTRDLALQVK+VF AIAP VGLSVG AVGQSSIADE+S LI++ K       D E +  E Q+
Sbjct:   11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQT 180          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.201e-21
Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  410 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 826
            P+  +P + P L   LQ  GI S FPVQ  V     E++G GL         RD+C+++PTGSGKTL++ +P+VQ LS R VR + AL VLPT++LA QV +VF+A      L V +  GQ S A E + L    ++  G+ +   D++
Sbjct:  189 PISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSAYTEGSSLKVVMITGQKSFAAEQTAL---SEIRGGVSHSMADIV 334          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  347 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 781
            K  P LP W+  P  V  S+ ED  P++ +P + P L+  L+  GI+S FPVQ AV             IG G ++  DLC+++PTGSGKTL++ +P+VQ L +R V  + ALVVLPT++LA QV  VF        L V L  GQ S+A E   L+++
Sbjct:  145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVFNIYTDTTPLRVALVTGQKSLAKEQESLVQK 303          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.222e-20
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 2
Query:  347 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 781
            K  P LP W+  P  V  ++ ED  P++ +P + P L+  L+  GISS FPVQ AV             +G G +   DLC+++PTGSGKTL++ +P+VQ L +R V  + ALVVLPT++LA QV  VF     A  L V L  GQ S+A E   L+++
Sbjct:  173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPLRVSLVTGQKSLAKEQESLVQK 331          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  338 AKKKSVPV-LP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 826
            AKKK V + LP W+  P       +   E+ P    +D L  L+     AL+ M I  LFPVQ  V  W        P    RD+C+++PTGSGKTL++A+PIVQ LS R    + ALVVLP  +LALQV  V + +     L V L   Q  + DE  +L+++ K   G  Y   D++
Sbjct:  102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYK---GKYYSKADIV 277          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  362 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 772
            L W+ +P+  S  E  P          +K  LQ+ G SS F VQV+V +        + I P +   DL +N+ TGSGKTL YA+PI+++L NR V  + A+V++PT+ L  QVK  FA ++    LSV       SI DE   L
Sbjct:  176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLSVVSLRSDISINDEAQRL 318          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  344 KKSVPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 772
            K    VLP W+  P+ V          L  +  +L   LQ   I+  F VQ AV    +  G       +  D+C+++ TGSGKTLSY +PIVQ LS+R V  L  +V++PTR+L +QV   F       GL V    GQ S+  E  +L
Sbjct:  104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQL 252          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_ASPNC (ATP-dependent RNA helicase dbp6 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 55/154 (35.71%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  365 PWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI------KRPKLEAGIC 805
            PW+ +P+  S  E      L  +D  L   L++ G    F VQ  V    + GP     DLCI++ TGSGKTLSY LP+V  L       L  L+V+PTR+L  Q ++     A   GL V  AVG  +I DE  E +        P ++  IC
Sbjct:  107 PWLANPLRASAQERRKFADLG-IDSSLLRVLEDNGYREAFAVQSTVIPLLLQGPTNHPGDLCISAATGSGKTLSYVLPLVTALKPLPAPRLRGLIVVPTRELVKQAREACELCAAGSGLRVASAVGNVAIKDEQRESLPGYVHRSEPNVDILIC 259          
BLAST of CK933330 vs. ExPASy Swiss-Prot
Match: DBP6_LODEL (ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus GN=DBP6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 45/147 (30.61%), Postives = 79/147 (53.74%), Query Frame = 2
Query:  362 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLCALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 778
            L W+ +P  +++ +  P    P L P +   L+++G  + F VQV V  + +         P  F  D+ +N+ TGSGKTL+Y++PI+++L +R V  + A+V++PT+ L  QV+     +A    L++       SI +E   LI+
Sbjct:  207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLNIVSLKNDISIREESERLIE 351          
The following BLAST results are available for this feature:
BLAST of CK933330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RH1_ARATH1.860e-6980.86DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ4.752e-5767.65DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_DANRE4.201e-2140.27ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DDX51_MOUSE1.222e-2041.51ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DDX51_HUMAN1.222e-2041.51ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DDX51_DROME4.069e-1637.99Probable ATP-dependent RNA helicase Dbp73D OS=Dros... [more]
DBP6_PICGU7.674e-1537.93ATP-dependent RNA helicase DBP6 OS=Pichia guillier... [more]
DBP6_SCHPO6.497e-1436.00ATP-dependent RNA helicase dbp6 OS=Schizosaccharom... [more]
DBP6_ASPNC2.469e-1335.71ATP-dependent RNA helicase dbp6 OS=Aspergillus nig... [more]
DBP6_LODEL1.600e-1230.61ATP-dependent RNA helicase DBP6 OS=Lodderomyces el... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_H01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933330 ID=CK933330; Name=CK933330; organism=Citrus sinensis; type=EST; length=845bp
GGGGACTCAACAACTAACCACACACCATCTTAAACTCTTCTTCTCTTACT
GGCCGCCACACACGAGTAGTCAGCCACCGCTCATCATCTTCTCTTAGCAT
CATCGTCATCAGCCTGTTACGGACTCCTGTTCAGCGCCATCTCCTCTCAC
GGCAGCTCACAACACGCTGCAGCCTGCAGTCCGTCAAGCTTCCGTCAGCG
CCATCTCTCACGGAAACTCACAACACGCTGCAGCCTGCAATCCGTCAAGC
TTCTCACGCCATCGCCGTCACTAGTATTGCCGAACTGCTGTCAAGGACTC
AAGGGTTTAGATTTGTCGGAGAAGAATAATGGAGGAAGCAAAGAAGAAGA
GCGTGCCAGTCTTGCCGTGGATGCGAAGCCCGGTTGATGTCAGTCTCTTT
GAAGACTGTCCTCTTGATCACCTCCCTTGTCTTGACCCCAGGTTGAAGGT
GGCTTTGCAGAACATGGGTATCTCGTCACTCTTCCCAGTGCAAGTTGCAG
TTTGGCAAGAGACAATAGGCCCTGGTCTATTTGAACGAGACCTTTGCATC
AATTCACCTACAGGAAGTGGGAAAACTTTGTCTTATGCTTTGCCAATAGT
TCAAACATTGTCCAATCGTGCTGTTAGATGTCTATGTGCTTTGGTGGTGC
TGCCCACGCGTGATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCGATT
GCACCTGCAGTGGGTTTGTCTGTTGGTTTGGCTGTGGGTCAATCTTCTAT
TGCTGATGAAATTTCGGAGCTTATTAAGAGACCTAAGCTCGAGGCAGGAA
TCTGTTATGACCCTGAAGATGTTTTGCAAGAGTTACAGAGTGCAG
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