CK933341

Overview
NameCK933341
Unique NameCK933341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.176e-66
Identity = 121/142 (85.21%), Postives = 129/142 (90.85%), Query Frame = 2
Query:   62 METAKNVKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 487
            M T K VKDVSPH+FVKAYA+HLKRSGK IELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KS G +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGK-IELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.554e-65
Identity = 121/141 (85.82%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   62 METAKNVKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            M T K VKDVSPHEFVKAYAAHLKRSGK IELP W DIVKTG LKELAPYDPDWYYIRAASMARK+YLRGGLGVG+FRRIYGG KRNGSRPPHF KS G VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGK-IELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.855e-64
Identity = 119/141 (84.40%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   62 METAKNVKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            M T K VKDVSPH+FVKAYA+HLKRSGK IELP W DIVKTG LKELAPYDPDWYYIRAASMARKIYLRGGLGVG+FRRIYGG KRNGSRPPHF KS G +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGK-IELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.058e-54
Identity = 101/140 (72.14%), Postives = 118/140 (84.29%), Query Frame = 2
Query:   68 TAKNVKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 487
            TA+ VKDV+PHEFVKAY+AHLKRSGK +ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHF KS G+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGK-MELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.240e-42
Identity = 76/136 (55.88%), Postives = 104/136 (76.47%), Query Frame = 2
Query:   77 NVKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            +VKDVS HEF +A+AA LK+SGK +++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y+R   G+GSF +IYGG +R G+ P HF K+ GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGK-MKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.649e-40
Identity = 77/135 (57.04%), Postives = 103/135 (76.30%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            VKDV+  EFVKA+AA LK+SGK ++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y+RGG+GVG+  +IYGG KR G++P  F      V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:    7 VKDVNQQEFVKAFAAFLKKSGK-LKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.516e-39
Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 493
            VKDV+  EFVKA AA  K+SGK ++ P W D VK G  KELAP+D DWYYIR AS+AR +Y+RGG+GVG+  +IYGG +RNG+RP H+S+   +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:    6 VKDVNQQEFVKALAAFFKKSGK-LKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_RAT (40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.249e-38
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            VKDV+  EFV+A AA LK+SGK +++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+   SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGK-LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_MOUSE (40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.249e-38
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            VKDV+  EFV+A AA LK+SGK +++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG RP HFS+   SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGK-LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CK933341 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 6.198e-38
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 2
Query:   80 VKDVSPHEFVKAYAAHLKRSGKQIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSRGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 484
            VKDV+  EFV+A AA LK+SGK +++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+   SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGK-LKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of CK933341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH9.176e-6685.2140S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH4.554e-6585.8240S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH3.855e-6484.4040S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ8.058e-5472.1440S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR9.240e-4255.8840S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE8.649e-4057.0440S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_MYXGL2.516e-3955.0740S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_RAT1.249e-3857.0440S ribosomal protein S19 OS=Rattus norvegicus GN=... [more]
RS19_MOUSE1.249e-3857.0440S ribosomal protein S19 OS=Mus musculus GN=Rps19... [more]
RS19_PONAB6.198e-3856.3040S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_G06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933341 ID=CK933341; Name=CK933341; organism=Citrus sinensis; type=EST; length=609bp
GGGGACATAGCACATACCGCAGCTGCTCCGCCGCTGAAGCACAGACTGAG
AGAGAGAGAGAATGGAGACTGCAAAAAACGTGAAGGACGTCTCTCCCCAC
GAGTTCGTCAAGGCCTACGCCGCCCATCTCAAGCGCTCCGGCAAGCAGAT
TGAGCTTCCTACTTGGAACGACATCGTCAAGACTGGAACGTTGAAGGAGC
TAGCCCCTTATGACCCCGATTGGTACTATATCAGGGCTGCTTCAATGGCG
AGGAAGATCTACTTGAGGGGTGGTCTTGGTGTTGGTTCCTTCCGTAGAAT
CTATGGAGGGGGGAAGAGGAACGGTAGCCGCCCACCTCATTTCAGCAAGA
GCAGAGGCTCTGTTGCTCGTCACATACTTCACCAATTGCAGGACACGAAC
ATCATCGAGCTTGACTCCAAGGGTGGAAGGAGAATCACATCCAGTGGGCA
GCGGGATCTTGATCAAGTTGCTGGACGGATTGCAGTTGTTGCCCCTTGAG
GGATTAGCTCAAGCTTTCAAAAGGATTGATGTTATTGAGTTAGTTGTTTG
AATGGGAGTAGTAGATAGAAAGCATCGTTAGTTGATTTTCAGTTCTCTGT
TAGTAACCT
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