CK933344

Overview
NameCK933344
Unique NameCK933344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK933344 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  402 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 680
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++GE+ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
[Close]
BLAST of CK933344 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  402 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 680
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++GE+ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   74 EEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
[Close]
BLAST of CK933344 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 29/93 (31.18%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  402 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 680
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++G++ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 164
The following BLAST results are available for this feature:
BLAST of CK933344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HNRPD_HUMAN4.156e-1132.26Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
HNRPD_MOUSE5.429e-1132.26Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRPD_RAT9.260e-1131.18Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004286_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933344 ID=CK933344; Name=CK933344; organism=Citrus sinensis; type=EST; length=872bp
GGGGGCCGCAGATCTATCTTTCGTCGAACAAAAGCTTTTGTGGTTACTCT
TCTTCTTCTTCTTCTTCCCAGTGGTCATCAATGGCCAAAAAGCGAAAGCA
CGACTCCAAAACCAGCGAACCCACGGAACCTCCACAAAAGCAATTACAAC
AAGAACCGCCAAAGCAAGAGGAGCCGATTGAAGAGGAGGGGTACGAAGAA
GAAGTAGAGGAAGAAGGAGAGGAAGAAGGAGAGGAAGAAGAGGAAGAGGA
AGAAGAGGAGGAAGAAGAAGAAGAAAAAGCCGACCAAAAGGAAGACGAAG
AGGAGGAAGAAAAAGCTGATCAAAATGATGAGGAGGACGACGAGCCGATA
CTGAGTCTTTTAGAGCCATTCAGCAAGGATCAGCTTGTTAATCTGCTCCG
CGAAGCAGCCGAAAATCATCGGGACGTAGCGAGTCGAGTTCGGCAAGTTG
CCGATGAGGATCCGGTGCATCGGAAGATATTCGTCCACGGTCTCGGTTGG
GACACCAAGGCCGAGACTTTAATTGACGCGTTCAAGCAGTATGGCGAGAT
CGAGGATTGCAAAGCAGTTTGTGATAAGGTCTCTGGAAAATCCAAGGGTT
ATGGTTTCATCCTATTCAAGACACGTAGCGGGGCCCGCAAGGCTCTTAAG
GAGCCCCAGAAGAAGATTGGTAACCGCATGACTGCCTGTCAATTGGCGTC
CATCGGGCCTGCCACGACTCCTGCTGTTGCTAGTACTGCGACACACCAGC
ACCAGCACCAGCACCAGCACCAGCACCAACACCAACACCAGCAGCATCAC
CAGCAGTCCGAGTATACTCAAAGGAAGATTTTTGTGAGCAATGTTGGGTC
GGAGTTGGAGCCGCAGAAATTG
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