CK933347

Overview
NameCK933347
Unique NameCK933347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.564e-86
Identity = 166/248 (66.94%), Postives = 196/248 (79.03%), Query Frame = 2
Query:   68 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            MA+LAQQ  G LRCPP+S++ LS+  S      K     +   IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD  GALVDITAKSSAYLP  EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED                     LRGFVPFSQISSKS+AEELL K++PLKF   DEEQSRL
Sbjct:    1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRL 243          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.622e-32
Identity = 73/169 (43.20%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  302 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            + FTLE+F + L+KYD++   G  V GTVF  ++RGAL+DI AK++AY+P +E  I+++   EE  + P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED                     LRGF+P S IS++   E+L+G+DLPLKF   DEE++RL
Sbjct:   10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRL 177          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 131.339 bits (329), Expect = 6.179e-30
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 2
Query:  290 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            P   + FT E+F + L++YD++   G  V GTVF  + RGAL+DI AK++A+LP +E  I++++  EE  + P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED                     LRGF+P S IS++   E+L+G++LPLKF   DE+++RL
Sbjct:    7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRL 178          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  308 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            FT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP +E   ++ + +     I      EF ++  N     L+LS+R ++Y  AW+R RQL +ED                     + GFVP S + +   +E+   K + LK    +E+ + L
Sbjct:    8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNI--NDTREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNL 173          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  305 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            SFT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP +E   + ++ +     I      EF ++  N     L+LS+R ++Y  AW+R RQL +ED                     + GFVP S +++ S       K + LK    +E+ + L
Sbjct:    7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNI--NDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNL 173          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 47/154 (30.52%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  317 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKF 778
            ++F  ALE    +S+ G  V+G V      GA +DI  K+ A+LP REA +H +  + EA +    + EF++I +   D  + +SLR +  E AW R  +LQ                        LR F+P S ++ K   + L GK L + F
Sbjct:   12 DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAF 164          
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 41/168 (24.40%), Postives = 78/168 (46.43%), Query Frame = 2
Query:  305 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808
            +F+L+EF  AL+K+D+++E G  V G +    N G  VD   KS  ++P +E  +     +E++  +     +F++  E   +  + LS R +Q + +WE   +L+                        LRGF+P S +  K   + L+G+ L       +++ ++L
Sbjct:    9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKL 175          
The following BLAST results are available for this feature:
BLAST of CK933347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RR1_SPIOL3.564e-8666.9430S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1A_SYNY38.622e-3243.2030S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNP66.179e-3040.4630S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RR1_PORYE4.753e-1430.3630S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORPU6.208e-1430.7730S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_SYNE75.255e-1330.5230S ribosomal protein S1 OS=Synechococcus elongatu... [more]
RS1B_SYNY37.589e-1224.4030S ribosomal protein S1 homolog B OS=Synechocysti... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004286_E10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933347 ID=CK933347; Name=CK933347; organism=Citrus sinensis; type=EST; length=818bp
GGGGATCTGAGCCAAATCCAGAACCAAAGGAAAGCTAAAAACTTGGCGAG
CTGAAGGGAAAGCAAGAATGGCGACCTTGGCTCAACAGTTCACAGGACTA
AGATGCCCACCAATCTCACACACACGCCTCTCAAGAAGAAAATCGATTAC
CCAAATTCAACAAAAGCTTCTGAATAGCAGAAAAAATAAAACGATAGTGT
CAGCAGTGGCAATATCAAATGCAGAGACTAGAGAGAGGGAGGAGCTCAAT
CAGCTCTTTGAAGAAGCTTACGAACGGTGTCGTACTGCTCCCATGGAAGG
CGTCTCTTTCACTCTCGAGGAGTTTCACTCTGCTCTTGAGAAGTATGACT
TCAATTCTGAATTAGGTACTAAAGTAAAGGGAACAGTTTTTTGTACAGAT
AACCGTGGAGCACTGGTCGATATTACTGCAAAGTCATCTGCTTATTTGCC
TACCCGAGAGGCATGCATTCACAAGATTAAACATGTAGAAGAGGCAGGTA
TAGTTCCGGGGTTGAAGGAGGAGTTTGTAATTATTGGTGAAAATGAAGCT
GATGATAGCTTGGTCTTGAGCCTACGGATGATCCAGTACGAGCTTGCCTG
GGAAAGATGTAGGCAGCTGCAATCTGAGGACGTTGTTGTAAAGGGTAAGG
TTGTTGGTGCAAACAAAGGTGGAGTGGTTGCTGAGGTGGAGGGCCTTCGT
GGATTTGTCCCTTTCTCCCAGATATCATCGAAATCAACTGCAGAAGAGCT
TCTCGGTAAAGATCTTCCTCTAAAGTTTNGTGGAGGTGATGAGGAACAGT
CTAGGCTTGNNNNNNGTA
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