CK933347
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 3.564e-86 Identity = 166/248 (66.94%), Postives = 196/248 (79.03%), Query Frame = 2 Query: 68 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 MA+LAQQ G LRCPP+S++ LS+ S K + IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDITAKSSAYLP EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED LRGFVPFSQISSKS+AEELL K++PLKF DEEQSRL Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRL 243
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.622e-32 Identity = 73/169 (43.20%), Postives = 103/169 (60.95%), Query Frame = 2 Query: 302 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 + FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P +E I+++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED LRGF+P S IS++ E+L+G+DLPLKF DEE++RL Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRL 177
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 131.339 bits (329), Expect = 6.179e-30 Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 2 Query: 290 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP +E I++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED LRGF+P S IS++ E+L+G++LPLKF DE+++RL Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRL 178
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14 Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 2 Query: 308 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 FT F + L+KY ++ LG V GT+F + G LVDI SAYLP +E ++ + + I EF ++ N L+LS+R ++Y AW+R RQL +ED + GFVP S + + +E+ K + LK +E+ + L Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNI--NDTREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNL 173
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14 Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 305 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP +E + ++ + I EF ++ N L+LS+R ++Y AW+R RQL +ED + GFVP S +++ S K + LK +E+ + L Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNI--NDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNL 173
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13 Identity = 47/154 (30.52%), Postives = 72/154 (46.75%), Query Frame = 2 Query: 317 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKF 778 ++F ALE +S+ G V+G V GA +DI K+ A+LP REA +H + + EA + + EF++I + D + +SLR + E AW R +LQ LR F+P S ++ K + L GK L + F Sbjct: 12 DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAF 164
BLAST of CK933347 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12 Identity = 41/168 (24.40%), Postives = 78/168 (46.43%), Query Frame = 2 Query: 305 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTREACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFXGGDEEQSRL 808 +F+L+EF AL+K+D+++E G V G + N G VD KS ++P +E + +E++ + +F++ E + + LS R +Q + +WE +L+ LRGF+P S + K + L+G+ L +++ ++L Sbjct: 9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKL 175 The following BLAST results are available for this feature:
BLAST of CK933347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933347 ID=CK933347; Name=CK933347; organism=Citrus sinensis; type=EST; length=818bpback to top |