CK933416

Overview
NameCK933416
Unique NameCK933416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933416 vs. ExPASy Swiss-Prot
Match: UBR7_MOUSE (Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.000e-55
Identity = 111/245 (45.31%), Postives = 146/245 (59.59%), Query Frame = 3
Query:  117 EAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCAPEGN--AGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEISRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSG-----KLENGICSNGSSRED 830
            E E  +S+ + L + EE E EA  VLGG + ++C+YS+G + RQA+++C TC PEG   AG+C ACS  CH  H++ EL+TKRNFRCDCGNSKF    CKLFP K   N+ N YN NF G+YC C RPYPDP+ E   EMIQC +CEDWFH  H+G  P +  S D      +++ +C+AC   CSFL  Y   +        A    + + D L  +P+A G G     K ENG   +   +ED
Sbjct:   13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVGRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLFPDKSKVNSCNKYNDNFFGLYCVCKRPYPDPEDEVPDEMIQCVVCEDWFHGRHLGAIPPE--SGD------FQEMVCQACMRRCSFLWAYAAQL--------AVTRISAEDDGL--LPNATGMGDEDVSKPENGAPQDNGLKED 239          
BLAST of CK933416 vs. ExPASy Swiss-Prot
Match: UBR7_HUMAN (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.328e-54
Identity = 108/242 (44.63%), Postives = 144/242 (59.50%), Query Frame = 3
Query:  117 EAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCAPEGN--AGVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEISRDDEGEPVYEDFICKACSAVCSFLSTYPQTIWAAGLRRNAGCNTNKDKDVLEEIPSAGGSG--KLENGICSNGSSRED 830
            E E  +S+ + L + EE E EA  VLGG + ++C+YS+G +KRQA+++C TC PEG   AG+C ACS  CH  H++ EL+TKRNFRCDCGNSKF    CKL P K   N+ N YN NF G+YC C RPYPDP+ E   EMIQC +CEDWFH  H+G  P +  S D      +++ +C+AC   CSFL       WA   +      + +D  ++  I   G     K ENG   + + +ED
Sbjct:   13 ELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPE--SGD------FQEMVCQACMKRCSFL-------WAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKED 239          
BLAST of CK933416 vs. ExPASy Swiss-Prot
Match: MLO2_SCHPO (Protein mlo2 OS=Schizosaccharomyces pombe GN=mlo2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.374e-30
Identity = 71/182 (39.01%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  117 EAEQTISINEYLNDVEEKELEADLVLGGDEGKECTYSKGYMKRQAIFSCLTCAPEGNA--GVCTACSLTCHDGHEIVELWTKRNFRCDCGNSKFGEFFCKLFPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEISRDDEGEPVYEDFICKACS 656
            E    +++ +Y+    E E EA  VL       CTYS GY+K Q +++CLTC     +   VC +CS++CH  H++V+L+ KR+FRCDCG ++     C L  S D   +EN YNHNF+G +C C+  Y +P+ EE   M QC +CEDWFHE+ +          D E    +E  +C  CS
Sbjct:    3 ETAHELTVKQYVEQQRELEREAREVLPYSFDT-CTYSMGYLK-QPLYACLTCQKASGSLNAVCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNFEGRFCICDTVY-NPETEEGT-MFQCILCEDWFHEKCLQKTNKGIAIPDAE---TFEWLVCSECS 177          
BLAST of CK933416 vs. ExPASy Swiss-Prot
Match: UBR7_DICDI (Putative E3 ubiquitin-protein ligase ubr7 OS=Dictyostelium discoideum GN=ubr7 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.204e-26
Identity = 87/247 (35.22%), Postives = 109/247 (44.13%), Query Frame = 3
Query:  123 EQTISINEYLNDV--EEKEL--EADLVLGGDEGKE--CTYSKGYMKRQAIFSCLTCAPEGNA--GVCTACSLTCHDGHEIVELWTKRNFRCDCG---NSKFGEFFCKL-----------------------------------------------FPSKDVENAENSYNHNFKGVYCTCNRPYPDPDVEEQVEMIQCCICEDWFHEEHIGLEPSDEISRDDEGEPVYEDFICKACSAVCSFLSTYPQ 689
            ++ ISI E LND   EEK L  EA      D G E  CT+ KGY+  Q++F+C TC    +   G C  CS+ CH  H++ EL+ KRNFRCDCG         F C+L                                               +    + N  N YNHNFKG YC C+ PY   D +E  +MIQC  CEDWFHE  + L  S+       GE  + D IC  C +   FL  YPQ
Sbjct:   65 DEIISIQEALNDQLEEEKNLLEEAKEQEQEDWGDESICTFDKGYIN-QSVFACKTCQLSNDKLFGFCYGCSMHCHLYHDVYELFNKRNFRCDCGTKIQEPNNSFKCQLSGILKEDDNNNVNNINNSNNTTTTTTTTTTTTTTTNNNHLNDIDIGSYDKSQILNERNHYNHNFKGKYCYCDSPY---DYKE--DMIQCIFCEDWFHENCLKLN-SNVTDIPSPGE--FSDLICADCLSKNQFLLLYPQ 302          
The following BLAST results are available for this feature:
BLAST of CK933416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBR7_MOUSE8.000e-5545.31Putative E3 ubiquitin-protein ligase UBR7 OS=Mus m... [more]
UBR7_HUMAN2.328e-5444.63Putative E3 ubiquitin-protein ligase UBR7 OS=Homo ... [more]
MLO2_SCHPO1.374e-3039.01Protein mlo2 OS=Schizosaccharomyces pombe GN=mlo2 ... [more]
UBR7_DICDI1.204e-2635.22Putative E3 ubiquitin-protein ligase ubr7 OS=Dicty... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_H03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933416 ID=CK933416; Name=CK933416; organism=Citrus sinensis; type=EST; length=872bp
GGGGAACCATTTTCTCTCTCTCTCTCTGTAATCAAANNNNNATTTAAAAT
CCCTGAAGGGTTTTGATAACCATCACAGGTTTTTGGAAAATGTCTGGAGA
GTTTGATGACGACGTGGAGGCAGAGCAAACCATTTCAATTAACGAGTACC
TTAACGATGTCGAAGAGAAGGAGCTGGAGGCAGATTTGGTTTTGGGTGGA
GATGAGGGCAAGGAATGTACCTATAGTAAAGGTTATATGAAGAGACAAGC
TATTTTCTCATGCCTTACTTGTGCCCCAGAAGGAAATGCTGGAGTATGCA
CAGCATGCTCATTGACTTGCCATGATGGACACGAGATCGTGGAGCTGTGG
ACCAAGAGAAATTTTAGGTGTGATTGTGGAAATTCAAAGTTTGGGGAGTT
CTTCTGCAAACTTTTCCCCAGTAAAGATGTAGAAAATGCTGAGAATTCAT
ATAATCATAACTTTAAAGGTGTATACTGCACTTGCAACCGCCCCTATCCT
GATCCGGATGTTGAAGAACAAGTTGAGATGATACAATGCTGTATCTGTGA
GGACTGGTTTCACGAGGAGCATATTGGTCTCGAGCCGTCTGATGAGATTT
CAAGAGATGATGAAGGAGAGCCAGTGTATGAGGATTTCATATGCAAGGCA
TGCTCGGCAGTTTGTTCTTTTCTGAGCACATATCCTCAAACCATATGGGC
AGCTGGGTTGCGACGAAATGCTGGTTGTAATACTAACAAGGATAAAGATG
TATTGGAAGAGATCCCTTCAGCTGGTGGTTCTGGAAAGCTTGAAAATGGT
ATTTGTTCTAATGGTTCCTCTAGAGAAGATAATGCAATTGCTAATACTAG
NNNTGAATCTGTGACTGGTGGG
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