CK933417

Overview
NameCK933417
Unique NameCK933417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.476e-61
Identity = 122/191 (63.87%), Postives = 145/191 (75.92%), Query Frame = 1
Query:  247 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AVPL-QDPQLQKQHINLEDSITKDRGSSSKCNKFSSAFEIAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAYAEGTQKSNGFY 804
            MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+ QD Q  +QH     S+   +  +S     ++  E  + E PRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A     QKSNG+Y
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTT---SLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA----GQKSNGYY 184          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.890e-51
Identity = 100/165 (60.61%), Postives = 123/165 (74.55%), Query Frame = 1
Query:  259 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDRGSSSKCNKFSSAFEIAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 753
            +A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+       L + +    +    + GSSS+ +    +       T +    RPPEKRQRVPSAYN+FIKEEIQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS-------LSRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.526e-50
Identity = 104/184 (56.52%), Postives = 132/184 (71.74%), Query Frame = 1
Query:  262 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---PQLQKQHINLEDSITKDRGSSSKCNKFSSAFEIAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSNGFY 804
            A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D     L+  +++  ++ + + GSSS+  +    F  ++++T  M  +RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAHFP+IHFGL        KLD+A   A   QK    Y
Sbjct:    8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYS-EYGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKVQRLY 186          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.581e-45
Identity = 105/199 (52.76%), Postives = 125/199 (62.81%), Query Frame = 1
Query:  265 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQ-----HINLEDSITKDRGSSSKCNKFS-----------SAFEI-AEHETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQ-KSNGFY 804
            S+ +CYV CN+C TILAV+VP +SLF  VTVRCG C NLL+VNM S +  +P  + QLQ Q     + N +D + + R + S  N              S  ++  +HE P+ PP+ RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E       GFY
Sbjct:   22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYV--LPASN-QLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEGFY 217          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.520e-45
Identity = 107/210 (50.95%), Postives = 135/210 (64.29%), Query Frame = 1
Query:  247 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQLQKQHINLEDS----ITKDR-----------GSSSKCNKFSSAFEIAEH-----ETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK--LDGNKQAKLDKAAAYAEGTQKSNGFY 804
            MS  +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD      H +L++S      +D+            SSSK     +A  +  +     +  +    RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL    +G K+         A  ++K  GFY
Sbjct:    1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD----HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKKLVDVDPIPTAPSSKKIQGFY 206          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.121e-44
Identity = 90/161 (55.90%), Postives = 114/161 (70.81%), Query Frame = 1
Query:  247 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDRGSSSKCNKFSSAFEIAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKL 729
            MS+   SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q+Q +     +  + D  S ++  + S+A         ++ PIRPPEKRQRVPSAYNRFIKEEIQRIK SNP+ISHREAFS AAKNWAH P +HFGL +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQ--RTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGLSV 159          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 103/194 (53.09%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  265 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ-----------KQHINLED----------------SITKDRG-SSSKCNKFSSAFEIA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 732
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A ++        E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.770e-44
Identity = 103/194 (53.09%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  265 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ-----------KQHINLED----------------SITKDRG-SSSKCNKFSSAFEIA-------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 732
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q             H  L++                S++   G SSS C   + A ++        E E P+  P    RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.000e-43
Identity = 103/211 (48.82%), Postives = 120/211 (56.87%), Query Frame = 1
Query:  262 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP---------LQDPQLQKQHINLEDSITKDRGSSSKCNKFSSAFEIAEH-------------------ETPRMPPI-RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAE-GTQKSNGFY 804
            +++++CYVHC++C+T+LAVSVP SSLF  VTVRCGHC+NLL+V +      +P         L  P        LE+   +  G +   N   S    A H                   E PR PP  RPPEKRQRVPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D     K +      E G     GFY
Sbjct:   21 STDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEM--RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFY 229          
BLAST of CK933417 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.776e-42
Identity = 102/218 (46.79%), Postives = 122/218 (55.96%), Query Frame = 1
Query:  268 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVPLQDPQLQ--KQHINLED-----------------SITKDRGSSSKC------NKFSSAFEIAEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 804
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P     L     H  L++                 +++    S+S C         +SA   A    P+ P   P      EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL  D G K+  +       E     +G Y
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246          
The following BLAST results are available for this feature:
BLAST of CK933417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB2_ARATH9.476e-6163.87Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB5_ARATH8.890e-5160.61Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB2_ORYSJ7.526e-5056.52Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ARATH5.581e-4552.76Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]
YAB6_ORYSJ9.520e-4550.95Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ORYSJ2.121e-4455.90Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSJ2.770e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI2.770e-4453.09Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB3_ARATH4.000e-4348.82Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB5_ORYSJ5.776e-4246.79Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_H04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933417 ID=CK933417; Name=CK933417; organism=Citrus sinensis; type=EST; length=855bp
GGGGAGACTTGTCCTTTCAGATTTTTTTCTTCTCTTTTTATCACCATTTT
CTCTCTCTCTCTCTCTCCAAATAATTATTATTTATACATGGAATCAAACC
ATTTTGTTTTGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTTG
TCTTTCTTTTAATTTGTTCAAGATTTGATTGATTAATAATAGAACTCTTT
GCGTTTCTATTGTTTGTCGGTACATTTCTTGATCTCCACTGAAACTATGT
CACTGGACTTGGCATCTGAACGTGTTTGTTATGTTCACTGCAACTACTGC
AACACCATTTTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACATTGT
GACTGTAAGATGTGGGCATTGTGCCAATTTGCTAAATGTAAACATGGTAT
CTGCACTTCAAGCAGTTCCTCTTCAAGACCCTCAGTTGCAGAAACAACAC
ATAAACCTAGAAGATTCCATTACTAAGGATCGTGGATCATCTTCAAAATG
CAATAAGTTTTCTTCAGCATTTGAGATTGCAGAGCATGAAACTCCTCGAA
TGCCTCCTATTCGTCCCCCAGAGAAGAGACAGCGAGTTCCTTCTGCATAC
AATAGGTTTATCAAGGAGGAAATCCAAAGGATTAAGGCTAGTAACCCTGA
CATCAGCCACAGAGAAGCTTTCAGCACAGCAGCAAAAAATTGGGCACATT
TTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGCAAGCAAAA
CTAGACAAGGCTGCAGCCTACGCAGAGGGCACTCAAAAGTCCAATGGATT
CTACTAAAAACATCTATATAATAAGTATATGATGTGAGTAGATGCATGCA
GCTCN
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