CK933418

Overview
NameCK933418
Unique NameCK933418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933418 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.053e-16
Identity = 51/149 (34.23%), Postives = 71/149 (47.65%), Query Frame = 2
Query:   20 PLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLSS-CFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 463
            P+I++ HGG+ +  SA++ IY  LC         V+VSV+YR APEHR P AY D    L W+ +  + ++    D  +  F+ GDS GGN+A+H                          FGG +RTESE RL  +  V     D  W
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHH-----VAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYW 255          
BLAST of CK933418 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.501e-16
Identity = 53/150 (35.33%), Postives = 71/150 (47.33%), Query Frame = 2
Query:   17 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 463
            +P+IV+ HGG+    SA + IY  LC  +     AV+VSV+YR APE+R P AY D   VL W+ ++   WL    D     F+ GDS GGN+ ++                          FGG +RTESE RL  +  V     D  W
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS--WLRSKKDSKVRIFLAGDSSGGNIVHN-----VAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYW 246          
BLAST of CK933418 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.471e-14
Identity = 48/150 (32.00%), Postives = 70/150 (46.67%), Query Frame = 2
Query:   17 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 463
            +P++++ HGG+    SA + IY   C  +      V+VSVDYR +PEHR P AY D    L+W+K+    WL    D +   ++ GDS GGN+A++                          FGG +RT+SE  L  +  V     D  W
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS--RVWLQSGKDSNVYVYLAGDSSGGNIAHN-----VAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYW 248          
BLAST of CK933418 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 49/150 (32.67%), Postives = 68/150 (45.33%), Query Frame = 2
Query:   17 LPLIVYVHGGALILLSAATKIYHDLCSDIAARVPAVIVSVDYRLAPEHRLPAAYYDALEVLHWIKTTQEHWLIQYADLS-SCFIMGDSGGGNVAYHXXXXXXXXXXXXXXXXXXXXXXXXXFFGGVKRTESELRLANQPIVPPSSTD*LW 463
            +P+I++ HGG+    SA + IY  LC  +      V+VSV+YR APE+  P AY D    L+W+ +    WL    D     F+ GDS GGN+A++                          FGG +RTESE  L  +  V     D  W
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS--RSWLKSKKDSKVHIFLAGDSSGGNIAHN-----VALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYW 248          
The following BLAST results are available for this feature:
BLAST of CK933418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ2.053e-1634.23Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH3.501e-1635.33Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.471e-1432.00Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.124e-1332.67Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_H05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933418 ID=CK933418; Name=CK933418; organism=Citrus sinensis; type=EST; length=465bp
GGGGACCAAGACCAAGCTTCCCCTTATTGTTTATGTCCACGGCGGAGCCC
TCATTCTCTTAAGCGCAGCCACAAAAATCTACCATGATTTATGCTCAGAT
ATTGCAGCCCGAGTCCCTGCTGTGATTGTGTCCGTAGATTACAGGCTTGC
CCCCGAGCACCGCCTGCCAGCGGCCTACTATGATGCCCTGGAAGTCTTGC
ACTGGATCAAAACCACTCAAGAACACTGGTTAATACAGTACGCTGACTTG
TCGTCTTGTTTCATAATGGGCGATAGCGGAGGTGGCAACGTAGCTTACCA
CGCAGCACTGCTAGCAGCGGCGCAAGTTGATGATTTGTTGCCTTTGAAGA
TCAGAGGTCTGATATTGCTCAAGCCTTTCTTTGGTGGGGTCAAAAGGACG
GAGTCGGAGTTGAGGTTGGCGAATCAACCGATTGTACCACCATCTAGTAC
TGATTGACTGTGGCA
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