CK933422

Overview
NameCK933422
Unique NameCK933422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933422 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.489e-71
Identity = 147/253 (58.10%), Postives = 171/253 (67.59%), Query Frame = 1
Query:   49 KMLGYEGVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILAAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYFGLCHSLSGYSEPFHLHFAGAEIIR 792
            K  GY  V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG SALVFCGYIVYDTDNLIKRFTYD+Y  +  S++ Y +  +L      I+R
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEY--ILASVALYLDILNLFLTILRILR 252          
BLAST of CK933422 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.269e-22
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  163 LRWGFIRKVYGILAAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDY 717
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT    +  +DF+  G               +++FF    T   V   + AL+FCG+I+YDT +L+ R + ++Y
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTL---QSKRDFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEY 210          

HSP 2 Score: 30.8018 bits (68), Expect = 5.269e-22
Identity = 10/24 (41.67%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  716 ILASVTLYLDILNLFISILRVLRS 787
            ++A+++LY+DI+NLF+ +L+ L +
Sbjct:  211 VIAAISLYMDIINLFLHLLKFLEA 234          
BLAST of CK933422 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.545e-20
Identity = 55/185 (29.73%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  163 LRWGFIRKVYGILAAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDY 717
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT    +  KDFS  G               ++ FF        V     AL+FCG+I+YDT +L+ + + ++Y
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTL---QSKKDFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEY 210          

HSP 2 Score: 33.4982 bits (75), Expect = 3.545e-20
Identity = 13/24 (54.17%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  716 ILASVTLYLDILNLFISILRVLRS 787
            +LA+++LYLDI+NLF+ +LR L +
Sbjct:  211 VLAAISLYLDIINLFLHLLRFLEA 234          
BLAST of CK933422 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.515e-17
Identity = 52/185 (28.11%), Postives = 80/185 (43.24%), Query Frame = 1
Query:  163 LRWGFIRKVYGILAAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDY 717
            +R  F+RKVY IL AQ+ +T+L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P        + G   LVFCGYI++DT N++ R++ +++
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEF 235          

HSP 2 Score: 31.187 bits (69), Expect = 2.515e-17
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = 2
Query:  716 ILASVTLYLDILNLFISILRVL 781
            I++S+ LYLD +NLFI IL++L
Sbjct:  236 IMSSLMLYLDFINLFIRILQIL 257          
BLAST of CK933422 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.190e-15
Identity = 53/208 (25.48%), Postives = 85/208 (40.87%), Query Frame = 1
Query:  118 DGERLYPG-LSYGENQLRWGFIRKVYGILAAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYFGLCHSL 738
            D + + PG +      +R  F+RKV GI+  Q++ T  + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF +      V     A +FC  +V D D ++ RF+ +DY   C SL
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSL 256          

HSP 2 Score: 31.9574 bits (71), Expect = 6.190e-15
Identity = 14/26 (53.85%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  716 ILASVTLYLDILNLFISILRVLRSSD 793
            I A V+LY+DILNLFI IL+++  ++
Sbjct:  250 ICACVSLYMDILNLFIRILQIVAEAN 275          
The following BLAST results are available for this feature:
BLAST of CK933422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH5.489e-7158.10BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE5.269e-2230.27Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN3.545e-2029.73Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO2.515e-1728.11Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL6.190e-1525.48Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_G03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933422 ID=CK933422; Name=CK933422; organism=Citrus sinensis; type=EST; length=813bp
GCGGGATAAANNNGAATTCACGAAAATTCAAANNNCAAAATCGCTTGAAA
GATGTTGGGCTACGAGGGCGTGAGGAGCAAAGATGACGGCAAATTCGAGG
TAGATCTGGAAGGCGGAGATGGGGAGAGGCTTTATCCCGGTCTCAGCTAC
GGCGAGAACCAGCTCCGATGGGGTTTCATTCGCAAGGTGTACGGCATTTT
GGCGGCCCAGATCGTTTTGACCACCTTGGTCTCCTCAATCACCGTTCTTT
ACAATCCCATCAACGATCTTCTCAGGGGCAATTCTGGCCTTCTCCTCTTC
CTTTCCATCCTCCCCTTCATCCTGTTATGGCCACTGCATGTGTATCATCA
GAAGCACCCTGTGAACTTGATTGTCCTTGGTCTCTTCACTGTATCTCTGA
GTCTTCCTGTTGCTGTAAGCTGCGCTAATACTGATGGTAGGATTGTGCTT
GAAGCATTAATTCTGACCTCGGCTGTGGTTTGTTCTTTAACTGGGTACAC
TTTCTGGGCCTCTAAGAAGGGCAAAGATTTCAGCTTTCTTGGACCAATTC
TATTCACCAGCCTCATAATCCTCATTCTGACTAGCTTTATGCAGATGTTC
TTTCCTCTGGGATCTACGTCCACTGCTGTTTATGGTGGAATTAGTGCACT
GGTCTTCTGTGGATACATCGTTTACGACACTGACAACTTGATCAAGCGCT
TCACATATGATGATTATTTTGGCCTCTGTCACTCTCTATCTGGATATTCT
GAACCTTTTCATCTCCATTTTGCGGGTGCTGAGATCATCAGATGGTTAGT
TNNNCAGTGGTCT
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