CK933427

Overview
NameCK933427
Unique NameCK933427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.220e-33
Identity = 74/103 (71.84%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQA NYKQ KKGANEATKTLNRGISE IVMAAD              EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:   26 VQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQAANYKQ +KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:   26 VQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ANYKQ +KGANEATKTLNRGI+EFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:   26 VQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.719e-33
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQA++YKQ +KGANEATKTLNRGISEFIVMAADT             EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:   23 VQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ NYKQ +KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   26 VQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ NYKQ +KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   26 VQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ NYKQ +KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   26 VQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ NYKQ +KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   26 VQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQ+ NYKQ +KGANEATKTLNRGISEFIVMAAD              EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   26 VQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CK933427 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.910e-33
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 3 
Query:    6 VQQAANYKQXKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 314
            VQQA + +Q KKGANEATKTLNRGISEFI+MAAD              EDKNVPY+FVPSK ALGRACGV+RPVI+ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:   24 VQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126
The following BLAST results are available for this feature:
BLAST of CK933427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NH2L1_CAEEL1.220e-3371.84NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
NH2L1_XENTR1.594e-3370.87NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA1.594e-3370.87NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
SNU13_SCHPO2.719e-3371.8413 kDa ribonucleoprotein-associated protein OS=Sch... [more]
NH2L1_RAT3.551e-3369.90NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE3.551e-3369.90NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA3.551e-3369.90NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN3.551e-3369.90NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN3.551e-3369.90NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_YARLI7.910e-3369.9013 kDa ribonucleoprotein-associated protein OS=Yar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_F02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933427 ID=CK933427; Name=CK933427; organism=Citrus sinensis; type=EST; length=542bp
GCGGGGTTCAGCAAGCTGCCAATTACAAGCAGNNNAAAAAGGGCGCCAAT
GAAGCTACTAAGACTCTTAACAGAGGTATCTCCGAGTTTATTGTGATGGC
TGCTGATACCGAGCCTCTGGAGATTCTTCTTCATCTTCCACTGCTTGCAG
AGGACAAGAATGTTCCCTATGTTTTTGTCCCTTCAAAGCAGGCTCTTGGC
AGGGCATGTGGGGTCACAAGACCTGTCATTGCTTGCTCTGTGACCTCAAA
TGAGGCGAGTCAGTTGAAGACTCAAATTCAACAGCTGAAGGATGCCATTG
AGAAGCTCTTGATATGAATATAATGGGATTCATATTCGGTGTGATGGGCC
TCTTTGATGGTGGTTAGAGGCTTTGACTGATGGTGTAGTTGTGCTGCTTG
GAAATCTTCTATTATTAATCTTTGTATTTTTGTCTTTTATGTTTTCTTGT
CATGCATTATGGGAAAGCTTTTGGAATCATATTTACCAGAACCTGCAATG
AATGAATGATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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