CK933431

Overview
NameCK933431
Unique NameCK933431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.946e-54
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 436
            EGQGSLLQCVLTPG+PYMPLPN+EIIRRV++QVLALFP  QGL V WSS VKI QSLYR GPGK P R DQKTPV+N FLAGSYTKQDYIDSMEG TLS RQASAYIC+AGE+L+ALRK++AA E  E +    + +DELSLV
Sbjct:  447 EGQGSLLQCVLTPGDPYMPLPNEEIIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAELNE-ISKGVSLSDELSLV 588          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.879e-53
Identity = 108/143 (75.52%), Postives = 118/143 (82.52%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 436
            EGQGSLLQCVLTPG+PYMPLPN+EII RV++QVLALFP  QGL V WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSYTKQDYIDSMEG TLS RQASA+IC+AGEEL ALRKQLAA +S + +       DE+SLV
Sbjct:  450 EGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGV-----DEMSLV 587          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.629e-52
Identity = 104/143 (72.73%), Postives = 117/143 (81.82%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 436
            EGQGSLLQCVLTPG+PYMPL NDEII+RV +QVLALFP  QGL V WSS +KI QSLYR GPGK P R DQKTPV+N FLAGSYTKQDYIDSMEG TLS RQASAYICN GE+L+ALRK++ A E  + +    + +DELSLV
Sbjct:  447 EGQGSLLQCVLTPGDPYMPLSNDEIIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAELND-ISKGVSLSDELSLV 588          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.629e-52
Identity = 102/143 (71.33%), Postives = 116/143 (81.12%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 436
            EGQGSL+Q VLTPG+PYMPLPND II RV +QVL LFP  QGL V+WSS VKI QSLYR GPGK P R DQKTPVKN FLAGSYTKQDYIDSMEG TLS RQA+AYIC+AGE+L ALRK++AA   ++ +   +  +DELSLV
Sbjct:  432 EGQGSLIQAVLTPGDPYMPLPNDAIIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRKKIAADHPEQLINKDSNVSDELSLV 574          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 3.433e-47
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 436
            EGQG+LLQCVLTPG+PYM +PND+II +VA QV  LFP  +GL V WSS VKIAQSLYR  PGK P R DQKTP+KN FLAGSYTKQDYIDSMEG TLS RQAS+YIC+AGEEL  L K+L++        + T   DELSLV
Sbjct:  424 EGQGTLLQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDELSLV 558          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQM 397
            EGQGSL+Q VLTPG+PYMPLPN+EII +V +QV+ LFP  +GL V WSS VKI QSLYR  PG  P R DQKTPVKN FL+GSYTKQDYIDSMEG TLS R+ SAYIC AGEEL+ALRK+L   + ++ +
Sbjct:  432 EGQGSLIQAVLTPGDPYMPLPNEEIISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTSAYICGAGEELLALRKKLLIDDGEKAL 561          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.771e-27
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   11 GQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 328
            G+GSLLQ VLTPG+P+M   N+ I  RV +QV ALFP    L + W S +K+AQSLYR  PG    R  Q TP+ N FLAGSYT+QDYIDSMEG TLS RQA+  I
Sbjct:  369 GEGSLLQLVLTPGDPFMKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSYTQQDYIDSMEGATLSGRQAAQAI 474          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: ZDS_ANASP (Zeta-carotene desaturase OS=Anabaena sp. (strain PCC 7120) GN=crtQ PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.021e-27
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 2
Query:    8 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPLPQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 328
            +GQGSLLQ VLTPG+P++   N+ I + V +QV  LFP  + L + W S VK+AQSLYR  PG    R +QKTP+ N FLAGSYT+QDYIDSMEG T+S R+A+  I
Sbjct:  367 QGQGSLLQLVLTPGDPFIKESNEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSYTQQDYIDSMEGATVSGRRAAKVI 473          
BLAST of CK933431 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 2
Query:   20 SLLQCVLTPGNPYMPLPNDEIIRRVARQVLALFPL----PQGLGVIWSSFVKIAQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 328
            S+L+ VL P   ++   ++EI+     ++  LFP          ++ S  VK  +S+Y+  PG+   R DQ+T V N +LAG +T Q Y+ SMEG  LS +Q +  I
Sbjct:  347 SMLELVLAPAQDWIGKSDEEIVAATMAEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPNFYLAGDFTMQKYLGSMEGAVLSGKQCAQAI 453          
The following BLAST results are available for this feature:
BLAST of CK933431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ZDS_CAPAN4.946e-5475.52Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER1.879e-5375.52Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC4.629e-5272.73Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_NARPS4.629e-5271.33Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH3.433e-4767.83Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE2.460e-4568.46Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SYNY31.771e-2759.43Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
ZDS_ANASP3.021e-2757.01Zeta-carotene desaturase OS=Anabaena sp. (strain P... [more]
CRTI_SYNY36.762e-1134.58Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_F06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933431 ID=CK933431; Name=CK933431; organism=Citrus sinensis; type=EST; length=723bp
GGGCGGAGAAGGGCAAGGTTCACTGCTCCAATGCGTTTTGACACCTGGGA
ATCCTTACATGCCCTTACCAAATGACGAAATCATAAGGAGAGTGGCAAGG
CAGGTTTTAGCTCTATTTCCATTGCCCCAAGGTTTAGGAGTTATTTGGTC
ATCTTTTGTCAAAATCGCGCAGTCTTTGTACCGTGGGGGACCTGGTAAAG
TCCCCTTGAGAACTGATCAAAAGACACCAGTTAAGAACTTGTTCCTCGCT
GGCTCATATACAAAACAGGATTACATAGATAGCATGGAAGGACCAACTTT
GTCTGATAGACAAGCCTCAGCGTACATATGCAATGCCGGGGAAGAATTAG
TAGCACTGAGGAAGCAGCTTGCTGCCTTTGAATCTCAAGAACAAATGGAA
GCTCCGACTACTACTAATGATGAGCTAAGTCTTGTCTGATCGCAATCTGT
TTGGGGCGTTGCGGCAGGAGTAAGGTTTTTCCACATCTAAACGCCCTTCA
CTTTTACAAGATTACATGGATCGTATGGGATGAGCAATTTGCTGCCTTAA
TTTGAATCTCAAGAACAAATGGAAAATCCAGCTTTTACTGATGAACTAAG
TAAATGGTTGTGATGGTGGGGCTCGAGTAAAGTTTTCCAATATCCATGTA
ATTCCAATGAGATAATCAATTTTCATAAAATTCATTATTAAGTTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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