CK933453

Overview
NameCK933453
Unique NameCK933453
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.983e-23
Identity = 48/59 (81.36%), Postives = 56/59 (94.92%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 181
            YPAEIVGKRVRYRLDG+K+IKI+LDPKERNNTEYKLE+FS VYR+L GKDVVF+YP+ +
Sbjct:  131 YPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAE 189          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 181
            YPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS VYR+L GKDVVFDYP+T+
Sbjct:  132 YPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTE 190          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 48/59 (81.36%), Postives = 57/59 (96.61%), Query Frame = 2
Query:    8 PAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 184
            PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS VY+KLTGKDVVF++PIT+A
Sbjct:  133 PAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.285e-22
Identity = 46/59 (77.97%), Postives = 55/59 (93.22%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 181
            YPAEIVGKR RYR+DG+KI+K++L+PKERNNTEYKLE+  GVYRKLTGKDVVF+YP+ D
Sbjct:  132 YPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.679e-22
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 181
            YPAEIVGKRVRYRLDGSKIIKIFLDP ERNNTEYKL++F+ VYR+L GKDVV++YP+ +
Sbjct:  132 YPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAE 190          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.885e-22
Identity = 46/59 (77.97%), Postives = 57/59 (96.61%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 181
            YPAEIVGKRVRYRLDGSKI+K+FLDPK +N+TE KLE+F+GVYRKL+GKDVVF++P+T+
Sbjct:  132 YPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.088e-21
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 175
            +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  GVYRKLTGKDVVF+YP+
Sbjct:  132 FPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.054e-21
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 184
            YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  GVYRKLTGKDVVF+YP+ +A
Sbjct:  132 YPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.731e-17
Identity = 36/56 (64.29%), Postives = 51/56 (91.07%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 172
            YP+EIVG+R+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:  135 YPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CK933453 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.348e-16
Identity = 35/56 (62.50%), Postives = 50/56 (89.29%), Query Frame = 2
Query:    5 YPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 172
            YP+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDVVF++P
Sbjct:  135 YPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
The following BLAST results are available for this feature:
BLAST of CK933453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_HORVU1.983e-2381.3640S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS7_ORYSJ3.383e-2383.0540S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS71_ARATH3.383e-2381.3640S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_BRAOL1.285e-2277.9740S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS7_SECCE1.679e-2279.6640S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS7_AVIMR4.885e-2277.9740S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS73_ARATH1.088e-2180.7040S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS72_ARATH7.054e-2175.0040S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS7_XENLA4.731e-1764.2940S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_ICTPU2.348e-1662.5040S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_D09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933453 ID=CK933453; Name=CK933453; organism=Citrus sinensis; type=EST; length=443bp
GGGTTACCCAGCTGAGATTGTTGGAAAACGTGTCAGATACCGTCTCGATG
GATCCAAAATAATCAAGATTTTCTTGGATCCAAAGGAGAGGAACAACACG
GAGTACAAGTTGGAGTCTTTTTCAGGGGTTTACAGAAAGCTTACCGGCAA
AGACGTGGTTTTTGATTATCCAATTACAGATGCCTGAAGAGTTGTTGCAG
ACGATCATTTGTGTTTGTCACTGTTTATTTTGTTGCACTATAATTTTGAT
TTGGATAGGGTACTATTTAAAATTTTGACTCTTAAATTTGGTATGACATC
ATTTTGCATAGGACAGATGAAGCTTTATGAATTTCTTTTTGTTTCTTCAT
TTTGTGAAATTGTTGAGCTGAGAAACATCATGTCTTCTAGTTGAAGTGAG
ATCTGTTTACTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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