CK933462

Overview
NameCK933462
Unique NameCK933462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933462 vs. ExPASy Swiss-Prot
Match: OTU1_DANRE (Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.640e-13
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    4 DGLHYDALA-ISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 273
            DG+HYD L  + P    P    QT+F       +  A    L+L  E +RK+ +TD   F LRC VCQ G++GQKEA EHA+ TGH NF E
Sbjct:  217 DGIHYDPLQKVLPGSDVPA---QTVFSTVDDVILAQA----LELADEARRKRQFTDVNRFALRCMVCQTGLVGQKEAREHAKETGHTNFGE 300          
BLAST of CK933462 vs. ExPASy Swiss-Prot
Match: OTU1_DROME (Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 DGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 273
            DG+HYD L +   E +P     TIFPV++      AE LA     E Q  + YT+   FTLRC  C + ++GQ +A EHA+ TGH NF E
Sbjct:  264 DGIHYDPLYM---ETSPSAAPATIFPVEELGVYQQAEQLA----NEAQSSRQYTNVDKFTLRCMQCDVRLVGQVQAQEHAKQTGHKNFGE 346          
BLAST of CK933462 vs. ExPASy Swiss-Prot
Match: OTU1_DICDI (Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 DGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR 279
            DG+HYDAL+I   +  PE+FD T F V    ++   +     L++++ +   +TDTA F+L C  C   + G+KEA  HA  TGH NF EY+
Sbjct:  236 DGIHYDALSICLTKNGPEDFDITRFSVDDKDSLAKMK----VLIEKEFKAGKFTDTAKFSLICLNCNKTLKGEKEAAIHASTTGHGNFTEYK 323          
BLAST of CK933462 vs. ExPASy Swiss-Prot
Match: OTU1_CHICK (Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.130e-12
Identity = 42/91 (46.15%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    4 DGLHYDALAIS-PFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 273
            DG+HYD L    P    P    QTIF       +  A    L+L  E +RK+ +TD   FTLRC VCQ G+ GQ EA EHA+ TGH NF E
Sbjct:  218 DGIHYDPLERKIPDSDVPP---QTIFSTTDDVVLAQA----LELADEARRKRQFTDVNRFTLRCMVCQKGLTGQVEAREHAKETGHTNFGE 301          
BLAST of CK933462 vs. ExPASy Swiss-Prot
Match: OTU1_HUMAN (Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 DGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQE 273
            DG+HYD L  +  +  P+    TIF       +  A    L+L  E +R++ +TD   FTLRC VCQ G+ GQ EA EHA+ TGH NF E
Sbjct:  264 DGIHYDPLQRNFPD--PDTPPLTIFSSNDDIVLVQA----LELADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGE 347          
The following BLAST results are available for this feature:
BLAST of CK933462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
OTU1_DANRE4.640e-1345.05Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1... [more]
OTU1_DROME3.928e-1243.33Ubiquitin thioesterase OTU1 OS=Drosophila melanoga... [more]
OTU1_DICDI3.928e-1240.22Ubiquitin thioesterase OTU1 OS=Dictyostelium disco... [more]
OTU1_CHICK5.130e-1246.15Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YO... [more]
OTU1_HUMAN9.675e-1143.33Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_C10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933462 ID=CK933462; Name=CK933462; organism=Citrus sinensis; type=EST; length=421bp
GGGGACGGGCTTCATTATGATGCTTTAGCTATATCTCCATTTGAGGGAGC
TCCAGAGGAGTTTGATCAGACTATATTTCCCGTACAGAAGGGCAGGACCA
TTGGGCCAGCAGAAGACCTAGCTCTGAAACTTGTCAAGGAGCAGCAAAGG
AAAAAGACCTATACCGACACGGCCAACTTCACTTTGCGCTGTGGGGTATG
CCAAATTGGAGTAATTGGACAGAAGGAGGCTGTTGAGCATGCTCAAGCGA
CTGGCCATGTCAATTTTCAGGAATATAGATGATATGGTAACCGTGTAGCA
AAAGTAATCCATTTTATCAGTTAGCTCTCTCTCTTTGAGCTAGAGTTCGT
TGACTTCTCAGAGAACCAATAAAATTGTTATGATTTCATAGATAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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