CK933473

Overview
NameCK933473
Unique NameCK933473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933473 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.598e-26
Identity = 65/136 (47.79%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   70 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXX-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 462
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                   C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of CK933473 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  211 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 462
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                    C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of CK933473 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 48/126 (38.10%), Postives = 59/126 (46.83%), Query Frame = 1
Query:   94 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 462
            +ALFLA+++LF A    C                     S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                   C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of CK933473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA2.598e-2647.7914 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC5.620e-1341.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE7.339e-1338.10Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_C02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933473 ID=CK933473; Name=CK933473; organism=Citrus sinensis; type=EST; length=728bp
GGGGAAAACAATNNNAAATACTAGTACTACTATATCANNNNGGAAAAGCT
AGTGGCTAGGATTTAAGAGATGGGTTCAAAAACCTCAGCTTCACTTGCTC
TCTTTCTTGCAGTCAACATTCTCTTTTTTGCCCTAGTCACTGCCTGTGGC
TCTTGCCCTTCTCCTAAACCAAAACCCAAGCCAAAGCCAACTCCCAGCCC
GTCAGGGGCTTCCTGCCCAAGAGATGCCCTTAAACTAGGTGTATGCGCCA
ACGTGCTTAATGGTTTGCTTAATGTCACTATTGGCACACCCCCGGTACAA
CCATGCTGCACTCTTATTCAAGGCCTTGCCGATCTTGAGGCAGCTGTTTG
CCTTTGCACTGCCATCAAAGCGAACATTTTGGGCATCAACCTTAATATCC
CGCTTTCACTCAGCCTTCTTTTGAACGTCTGTTCAAAGAGTGTGCCCCGT
GGTTTCCAGTGTGCTTAATGATGATCATATATTTCTGTATCTTCGTCTTT
AATTTAATTTACAGGTTCTGGGATTATGAGTTCTGCACGGTAATGTGTGT
TACTGGTAATTTCTGTTGTTTAATAATTTTTCATACAGGTGGTTTGATTG
CGAGATGACAGTGAATAAGTCTGATTTGTTTACCTTGGTGGTGGTGTTTT
CTTTATTATGTATTTTTCATTTAACAGAAGATGAATTACTCGTTTGTCAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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