CK933477

Overview
NameCK933477
Unique NameCK933477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 7.562e-74
Identity = 137/194 (70.62%), Postives = 169/194 (87.11%), Query Frame = 2
Query:    5 KTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 586
            ++++V Y S+R  DDLDTRLLRAMITKG+IEPISD +VNLVNAD+ AKQ+GLR++EER+++D SPE P++ IQVQI NVES FA A+S++G+I +EG+VK GVPHLT VGSF VDVSLEG++ILCRQVDQPGMIG+VGNILG +NVNV+FMSVGR   RK A+MAIGVDE+P  +TL++IG V AIEEFVFLKL
Sbjct:  431 QSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624          
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 54/197 (27.41%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   11 VKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAI-----SESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 586
            V++ Y+   A +  D  L++    KGL+ PI    +NLVNA   AK R + + E                    +  E K+ +AI     S+  +  + G + +  P + +V  +EV    EG + + + +D+PG IG+V   LG   +N++ M VGR  P   +VM + +D    +E ++KI ++P I++   + L
Sbjct:  349 VELIYSGELAKEKTD--LIKRAFLKGLLSPILLAGINLVNAPIIAKNRNINVVES-------------------STSEEKYGNAIKITAESDKKKFSIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRPGTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKDVAVINL 524          
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 57/191 (29.84%), Postives = 94/191 (49.21%), Query Frame = 2
Query:   17 VSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 586
            V+Y    A    D  L R M+ + ++ PI    VNL+NA   AK+RG+ +TE R        S +              A+A S+ G   VE   +K+  P +  +  + VDV  EG++I+ R  D PG IG +G  LG   +N++ M VGR      AVM + VD+    E ++++  +  +++ V +++
Sbjct:  352 VTYCGELAEMQFDI-LTRTML-QAILNPILTEPVNLINAPSIAKKRGIMVTEARRSESDGYRSII-------------IATAESDRGGFSVEATHIKE--PTIIGINGYRVDVKPEGTMIIARYRDLPGTIGAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNVDDAVAIEI 525          
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 53/170 (31.18%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   83 KGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANV--ESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 586
            KGL+       VN VNA   AK+RG+R+ E +   D S       + ++      E     A+  +GEI++           T V  F ++V     ++     D PG+IGK+G++LGS NVN++ M VGR   R  A+MA+ +D+      L +I  V  I +   +KL
Sbjct:  399 KGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHLKATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPGIIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKVAGIRDAYTVKL 554          
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 50/174 (28.74%), Postives = 81/174 (46.55%), Query Frame = 2
Query:   50 LDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKF---ASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAI 562
            L+T  +   +  G ++P  D  VN VNA   AK+RG+  +E+   +  S       I V++    S F   A+ I   GE  VE            +  F +D    G ++  +  D  G+IG+VG ILG  ++N++ M VGR      A+M +  D     + +K++ +VP I
Sbjct:  358 LETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEK---ISSSESGYDNCISVKVTGDRSTFTVTATYIPHFGERIVE------------INGFNIDFYPTGHLVYIQHQDTTGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDI 516          
BLAST of CK933477 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 53/196 (27.04%), Postives = 95/196 (48.47%), Query Frame = 2
Query:    5 KTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGNILGSENVNVSFMSVGRVAPRKHAV--MAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 586
            + VKV+ +   A  +  T  +   + KGL EPI    +NLV+A   A +RG+ + E ++      ES LE + V+            S   E+ + G        + K+  + V+   +G  I+    D+PG+IG+VG + G  N+N++ M VGR   +   +  M + VD+ P  E L+++  +  I +  +++L
Sbjct:  347 RKVKVTCSGKLATKN--TEFVTRALLKGLFEPILSNEINLVSAKPVAVERGITIEESKVESVEHYESLLE-VWVE------------SNGKEMYLAGTCFGNEYRILKIDVYNVNFVPKGHYIISLHEDKPGVIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKLDGIIDATYVEL 527          
The following BLAST results are available for this feature:
BLAST of CK933477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SERA_ARATH7.562e-7470.62D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA5.508e-1627.41D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH6.733e-1429.84D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_SYNY39.723e-1331.18D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_BACSU4.825e-1228.74D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_ARCFU2.395e-1127.04D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004285_A12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933477 ID=CK933477; Name=CK933477; organism=Citrus sinensis; type=EST; length=863bp
GGGGAAAACCGTGAAAGTGTCGTATGCTTCTTCGAGGGCCCCCGATGACC
TTGACACAAGATTGCTCCGTGCCATGATCACCAAGGGTCTGATTGAGCCC
ATATCTGATGTTTTTGTGAACTTAGTTAATGCTGATTACACAGCCAAACA
GAGAGGCCTCCGGTTAACTGAAGAACGAATTCTCCTAGATGGTTCACCTG
AGAGTCCACTCGAATTCATCCAGGTTCAGATTGCCAATGTGGAATCAAAA
TTTGCCAGTGCCATATCCGAGTCTGGGGAGATCAAGGTCGAGGGACGAGT
GAAGGATGGAGTTCCACATTTGACAAAGGTAGGATCTTTTGAGGTGGATG
TGAGTTTGGAAGGCAGCATCATACTCTGCAGACAGGTTGATCAGCCAGGT
ATGATCGGCAAAGTGGGAAATATTTTGGGAAGTGAGAATGTGAATGTCAG
TTTCATGAGTGTTGGAAGGGTTGCTCCGCGGAAGCATGCGGTGATGGCAA
TTGGAGTGGATGAACAACCCCGCAAAGAAACATTGAAAAAGATTGGTGAT
GTTCCCGCCATAGAAGAGTTTGTTTTCCTTAAGTTGTAATGTGTCTCAGC
GTCACCACCACATCCAAATTTTTTATGCTATTATTTTTTCCGTCCTCGGA
GAGAGAGAAATGGGTGTCTTTACCGCATTGTAGTGCACGATTTTTAGGAC
TTTCATTTTACTGTTCTTTGTTAGGCTGGCAGTTTTAGGAAAGATAAATG
AATAATTAATTGTGCTTTGCGAAGAAAGGGTTTGTTGTGTGTACTTTAAT
CGAGTTGTTATCATCTTAAATTGAAGTTTTCTTTAGTAAAAAAAAAAAAA
AAAAAAAAAAAAA
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