CK933895

Overview
NameCK933895
Unique NameCK933895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.040e-95
Identity = 163/193 (84.46%), Postives = 181/193 (93.78%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR++ARQKKA+KIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGI+VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGAR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.217e-93
Identity = 164/193 (84.97%), Postives = 177/193 (91.71%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKA+KIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIGIS+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGAR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 8.424e-93
Identity = 163/193 (84.46%), Postives = 177/193 (91.71%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKA+KIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIGI+VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+R+ER N+RH GAR
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGAR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.460e-92
Identity = 161/193 (83.42%), Postives = 177/193 (91.71%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RR+VARQKKA+KIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+R+ER N RH GAR
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGAR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.548e-83
Identity = 149/193 (77.20%), Postives = 166/193 (86.01%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            MKHNNVIPNGHFKK W+NYVKT FNQPA K RR++ARQ KA+KIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIGISVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+R+E  N+RH G R
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVR 193          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.351e-74
Identity = 136/186 (73.12%), Postives = 155/186 (83.33%), Query Frame = 2
Query:  104 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARL 661
            NGHFKKHWQNYVKTWFNQPARK RR++ARQKKA+KI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH GAR+
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIGARM 190          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.888e-62
Identity = 116/193 (60.10%), Postives = 145/193 (75.13%), Query Frame = 2
Query:   80 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            ++ N+++PNGHF K WQ +VKTWFNQPARK RR+ AR +KA   FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+GI+VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KLRIER N R  G R
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNARLKGMR 194          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.315e-58
Identity = 116/190 (61.05%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I N HF K WQ  V+TWFNQPARK RR+ ARQ KA +I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIGISVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 1.076e-55
Identity = 110/190 (57.89%), Postives = 135/190 (71.05%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N +I N HF K WQ  V+TWFNQPARK RR+ ARQ KA +I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIGI+VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ RAN R FG R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.405e-55
Identity = 110/193 (56.99%), Postives = 138/193 (71.50%), Query Frame = 2
Query:   83 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            K NN+IPN H+ K WQ +VKTWFNQPARK RR   R KKA  +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIGI+VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  V+  +VT+D K FKA+  LR  R + R  G R
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIR 195          
The following BLAST results are available for this feature:
BLAST of CK933895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL131_ARATH4.040e-9584.4660S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_BRANA2.217e-9384.9760S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA8.424e-9384.4660S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL133_ARATH5.460e-9283.4260S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH3.548e-8377.20Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC1.351e-7473.1260S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW5.888e-6260.1060S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE2.315e-5861.0560S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU1.076e-5557.8960S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_DROME1.405e-5556.9960S ribosomal protein L13 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933895 ID=CK933895|Name=CK933895|organism=Citrus sinensis|type=EST|length=800bp
GGGGGTTCGTTTCGGCTTTGCTGCCGTCGAGACTGAGAGAAACGGAGATA
GTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACAATGTAATT
CCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTT
TAACCAACCGGCTCGCAAAAATCGACGACAAGTTGCTCGTCAAAAGAAGG
CAATTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCCCGTCGTT
CATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGCAGAGGCTT
TACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAA
CAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGT
CTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGT
TTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGG
AATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTACTCTT
GAGAAGCCTACTGTCGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTT
CAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTG
GTGCCAGGTTGAAGAAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAA
ACAAACTTGTTTAAGCAGCACATTGAGTGTGGCACTACATTTTACATTTC
AATTTNNNATCTTTTTGTTATAGTGATTTTCATCTCTTNGCTTTAGGTTT
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