CK933949

Overview
NameCK933949
Unique NameCK933949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933949_ssr745 microsatellite CK933949_ssr745:745..756. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 6.310e-51
Identity = 113/267 (42.32%), Postives = 155/267 (58.05%), Query Frame = 1
Query:    4 IIEGLGESKEASGLSEFQ--SLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFA 798
            +I+ + ES E   L +     L   +   + GK+ FLVLDDVW+ D  KWD     LK G  G+ IL+TTR E I  +MGT +   +S   L++E+CWL FKQ AF  +  E   +L  IG++I +KC G+PLAAK +G LLR K    EW+ + DSE+W L +    +L  L LSY+ LP +  +++CF+YCAVFPKD  ++KE LI+LWMA  +  +             +N L  RSFFQEIE       F   KMHD++HD A
Sbjct:  222 LIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLS--NLSQEDCWLLFKQRAFCHQT-ETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLD--LRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYF---KMHDLIHDLA 480          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.530e-48
Identity = 109/267 (40.82%), Postives = 150/267 (56.18%), Query Frame = 1
Query:    4 IIEGLGESKEASGLSEFQ--SLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFA 798
            +I+ + ES E   LS+     L   +   + GK+ FLVLDDVW+ D +KW      LK G  G+ +L TTR E +  +MGT +   +S   L+ E+CW  F Q AF G   E    L  IG++I +KC G+PLAAK +G +LR K   +EW+ + DS +W L +    +L  L LSY+ LP +  +++CF YCAVFPKD  M KE LI+ WMA G+  +             +N L  RSFFQEIE +     F   KMHD++HD A
Sbjct:  222 LIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELS--NLSPEDCWFLFMQRAF-GHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLD--LRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYF---KMHDLIHDLA 480          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.583e-46
Identity = 106/265 (40.00%), Postives = 148/265 (55.85%), Query Frame = 1
Query:    4 IIEGLGESKEASGLSEFQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFA 798
            I+E + E +   G  +   L   +   + GK+  LVLDDVW+ D  KW      LK G  G+ +L TTR E +  +MGT +   +S   L++E+CWL F Q A FG   E    L  IG++I +K  G+PLAAK +G +L  K   + W+ + DS +W L +    +L  L LSY+ LP +  +K+CF+YCAVFPKD  M+KE+LISLWMA G+  +             +  L  RSFFQEIE  +    F   KMHD++HD A
Sbjct:  226 IVESI-EGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELS--NLSQEDCWLLFMQRA-FGHQEEINPNLVAIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLD--LKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYF---KMHDLIHDLA 481          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.757e-44
Identity = 104/258 (40.31%), Postives = 143/258 (55.43%), Query Frame = 1
Query:   25 SKEASGLSEFQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFA 798
            S     L+ FQ  +  +   + GK+  LVLDDVW+ D  KW      L  G  G+ IL TTR E +  +MGT +   +S   L+  +  L F Q AF G+  E    L  IG++I +KC G+PLAAK +G LLR K    EW+ + D+E+W L +    +L  L LSY+ LP +  +++CF+YCAVFPKD  M KE LI+LWMA G+  +             +N L  RSFFQEIE    +  F   K+HD++HD A
Sbjct:  236 SPHVEDLASFQKKLQEL---LNGKRYLLVLDDVWNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYHLS--NLSPHDSLLLFMQRAF-GQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLD--LRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEAKSGNTYF---KIHDLIHDLA 482          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.561e-33
Identity = 83/243 (34.16%), Postives = 132/243 (54.32%), Query Frame = 1
Query:   91 GKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLE--PIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYF-NAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVS 810
            G    LVLDD+W+ +   WD       +   GS+ILVTTR++ +A +M        +++ L++ +CW  F +  F  +  E C   E   +  +I  KC+GLPLA K +G +LR +  V EW+R+L S +W L      LL  L +SY  LP++  +KRCF+YC++FPK ++ +K++++ LWMA+G+                YF+ L +RS  Q+ +         R  MHD +++ AQF S
Sbjct:  276 GLPFLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHVH--NLQPLSDGDCWSLFMKTVFGNQ--EPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAH--LKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTK--------TRYIMHDFINELAQFAS 504          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.023e-32
Identity = 84/264 (31.82%), Postives = 130/264 (49.24%), Query Frame = 1
Query:   25 SKEASGLSEFQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDC-ERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMA-QGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVS 810
            +  A    +  SL   + +++ GK+  LVLDD W    ++W+ F     +   GSKI++TTR+E ++ +          ++ +  EECW    + AF         + LE IG++IA +CKGLPLAA+ I + LRSK    +W  +  +           +L  L LSY+ LP    +KRCF+ C++FPK +  D+EEL+ LWMA    +              Y   L  +SFFQ +     D       MHD+++D A+ VS
Sbjct:  249 TSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSEIVSTV--AKAEKIYQMKLMTNEECWELISRFAFGNISVGSINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKN----FSSYTNSILPVLKLSYDSLP--PQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDLVAQSFFQRL-----DITMTSFVMHDLMNDLAKAVS 499          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.568e-32
Identity = 82/258 (31.78%), Postives = 134/258 (51.94%), Query Frame = 1
Query:   52 FQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDC--ERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAP--LLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVSR 813
            ++ L+  +   +  K+  +VLDDVW   +  W      L +G++GS++++TTR+ ++A       S    IE L E+E W+ F   AF     E C  + LEPI RK+  +C+GLPLA   +G+++ +K    EW+++  +  W+L    +  +    + LS+NDLP    +KRCF YC++FP +Y M ++ LI +WMAQ +               Y N L  R+  Q I  +         KMHD++ + A  VS+
Sbjct:  265 YRELVEKLVEYLQSKRYIVVLDDVWT--TGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAF-PASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYP--LKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRP-KAFKMHDVIWEIALSVSK 516          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 85/269 (31.60%), Postives = 140/269 (52.04%), Query Frame = 1
Query:    4 IIEGLGESKEASGLSEFQSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCER--LEPIGRKIARKCKGLPLAAKVIGNLLRSKITV-KEWQRILD---SEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHD 792
            I+  LG+   AS   +  +L+  I + + GK+  +V+DDVWD + + WD  +  L  G  G  ++VTTR+ES+A+ +   +  T   E L+ +  WL F  +AF       CER  LE +G++I  KCKGLPL  K +G LL  K  V  EW+RI +    E+         +++ L LSY++LPS+  +K C    +++P+D  + K++L+  W+ +G+                F+ L  R   + ++K       + CK+HD+V D
Sbjct:  233 ILRNLGD---ASVGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRG-QGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAAN-DGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSH--LKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDKTY-SGTIITCKIHDMVRD 493          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RPP13_ARATH (Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.767e-25
Identity = 78/266 (29.32%), Postives = 136/266 (51.13%), Query Frame = 1
Query:   13 GLGESKEASGLSEF--QSLMSHIHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILDSEMWKLEEIGQGLLAPLL--LSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFA 798
            G+   +E   + +F  + L  +++  + GKK  +V+DD+W+ ++  WD     L     GS++++TTR +++A  +         +  L  EE W  F+Q AF     +D E L   G+++ +KC+GLPL   V+  LL  K T  EW  + +S +W+  +     +AP++  LS+ +L   S  K CF Y ++FP+DY +D E+LI L +A+G+               Y   L  RS  + + ++      M C++HD++ D A
Sbjct:  241 GMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWEREA--WDSLKRALPCNHEGSRVIITTRIKAVAEGVDG-RFYAHKLRFLTFEESWELFEQRAFRNIQRKD-EDLLKTGKEMVQKCRGLPLCIVVLAGLLSRK-TPSEWNDVCNS-LWRRLKDDSIHVAPIVFDLSFKELRHES--KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRRER--GKVMSCRIHDLLRDVA 496          
BLAST of CK933949 vs. ExPASy Swiss-Prot
Match: RPS5_ARATH (Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.730e-24
Identity = 76/249 (30.52%), Postives = 123/249 (49.40%), Query Frame = 1
Query:   73 IHRSIGGKKIFLVLDDVWDGDSNKWDPFFFCLKNGLHGSKILVTTRNESIARMMGTTESDTISIEQLAEEECWLFFKQLAFFGRCFEDCERLEPIGRKIARKCKGLPLAAKVIGNLLRSKITVKEWQRILD---SEMWKLEEIGQGLLAPLLLSYNDLPSNSMVKRCFSYCAVFPKDYSMDKEELISLWMAQGYFNAXXXXXXXXXXXXYFNILATRSFFQEIEKDEDDDDFMRCKMHDIVHDFAQFVS 810
            IH  +  +K  L+LDD+W+  + K     +  K+  +G K+  TTR+  +   MG    D + +  L  EE W  F Q+            +  + RK+ARKC+GLPLA  VIG  +  K TV EW   +D   S       +   +L  L  SY++L +  ++K CF YC++FP+DY +DKE L+  W+++G+ N              + I+ T    +     E++ +    KMHD+V + A ++S
Sbjct:  251 IHNVLRRRKFVLLLDDIWEKVNLKAVGVPYPSKD--NGCKVAFTTRSRDVCGRMGV--DDPMEVSCLQPEESWDLF-QMKVGKNTLGSHPDIPGLARKVARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAIDFSGMEDEILHVLKYSYDNL-NGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQG--YEIIGT--LVRACLLLEEERNKSNVKMHDVVREMALWIS 489          
The following BLAST results are available for this feature:
BLAST of CK933949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RGA3_SOLBU6.310e-5142.32Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA1_SOLBU6.530e-4840.82Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA2_SOLBU3.583e-4640.00Disease resistance protein RGA2 OS=Solanum bulboca... [more]
RGA4_SOLBU9.757e-4440.31Putative disease resistance protein RGA4 OS=Solanu... [more]
R13L1_ARATH1.561e-3334.16Putative disease resistance RPP13-like protein 1 O... [more]
DRL21_ARATH5.023e-3231.82Putative disease resistance protein At3g14460 OS=A... [more]
RPM1_ARATH8.568e-3231.78Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
R13L4_ARATH3.047e-2931.60Disease resistance RPP13-like protein 4 OS=Arabido... [more]
RPP13_ARATH7.767e-2529.32Disease resistance protein RPP13 OS=Arabidopsis th... [more]
RPS5_ARATH1.730e-2430.52Disease resistance protein RPS5 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933949 ID=CK933949; Name=CK933949; organism=Citrus sinensis; type=EST; length=814bp
GGGATCATTGAAGGTCTAGGCGAGTCAAAAGAAGCTTCTGGTTTAAGCGA
ATTCCAATCTCTTATGAGCCATATCCATAGATCAATTGGAGGAAAAAAAA
TTTTTCTTGTCTTAGATGATGTATGGGATGGGGATTCCAATAAATGGGAT
CCATTCTTCTTTTGTCTAAAGAATGGTCTCCACGGAAGTAAAATTTTGGT
AACCACACGTAATGAGTCAATTGCACGTATGATGGGAACAACAGAGTCAG
ATACTATCTCCATTGAACAACTGGCTGAAGAGGAATGCTGGTTGTTTTTC
AAGCAGTTAGCATTTTTCGGTCGCTGTTTCGAGGATTGTGAAAGATTAGA
ACCAATCGGGCGAAAAATTGCACGCAAGTGCAAAGGCCTGCCTCTTGCTG
CAAAGGTAATAGGGAATCTCTTGCGCTCTAAAATTACAGTAAAAGAGTGG
CAAAGAATTTTAGATAGTGAAATGTGGAAATTAGAAGAGATTGGGCAAGG
TCTTTTGGCTCCTTTGTTGTTGAGTTATAACGATTTGCCCTCCAATTCTA
TGGTAAAACGGTGCTTCTCATATTGTGCTGTCTTTCCAAAAGACTACAGT
ATGGATAAAGAAGAATTGATTAGTCTGTGGATGGCTCAAGGTTACTTTAA
CGCAGAAGAAGACGAAGAAATGGAGATGATTGGAGAAGAGTATTTCAACA
TCTTGGCAACACGCTCTTTCTTTCAAGAGATTGAAAAAGATGAGGATGAT
GATGATTTTATGAGGTGTAAGATGCATGACATAGTACATGATTTTGCCCA
ATTTGTAAGTAGAA
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