CK934050

Overview
NameCK934050
Unique NameCK934050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9656 contig Csv1_Contig9656:213..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.556e-108
Identity = 195/224 (87.05%), Postives = 210/224 (93.75%), Query Frame = 2
Query:   74 MASGGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCCR 745
            MASGGGYGD N KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSK+TIGVEFQTRTLVI HK+VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHI RWLEELR+HADKNIVIILIGNK DL  QR VPTEDAKEFA+KEGLFFLETSALEATNVE+AF TVLTEI+NIVNKK+L A E QGNGN ASLSG+KI++PGPAQEIPAK +MCC+
Sbjct:    1 MASGGGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCCQ 224          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 381.333 bits (978), Expect = 3.610e-105
Identity = 189/217 (87.10%), Postives = 205/217 (94.47%), Query Frame = 2
Query:   89 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            GYGD +QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTL IQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHI RWLEELR+HAD+NIVI+LIGNK+DLE+QRAVPTEDAKEFAQKEGLFFLETSA+EATN+E+AF+TVLTEIFNIVNKKNL A + Q NGNPASL+GKKILVPGP Q IP K + C
Sbjct:    4 GYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACC 220          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 8.891e-104
Identity = 187/217 (86.18%), Postives = 203/217 (93.55%), Query Frame = 2
Query:   89 GYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            GYGD +QKIDYVFKVVLIGDSAVGK+QILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQ+FDHI RWLEELR+HAD+NIVI+L GNK+DLE+QRAVPTEDAKEFAQKEGLFFLETSA+EAT +E+AF+TVLTEIFNIVNKKNL A E Q N NPASL+GKKILVPGP Q IP K + C
Sbjct:    4 GYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACC 220          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 6.609e-91
Identity = 170/220 (77.27%), Postives = 189/220 (85.91%), Query Frame = 2
Query:   83 GGGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEG-QGNGNPASLSGKKILVPGPAQEIPAKSSMC 739
            GG YG+  QKIDYVFKVVLIGDSAVGKSQ+LARFARNEF+LDSKATIGVEFQTRTL I  ++VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI++RQSFDH+ RWLEELR HADKNIVI+LIGNKSDL   R VPTEDAKEFA++E LFF+ETSALE+TNVENAFMTVLTEI+ IV+KKNL A E    +GN + L G KI+VPG     P K+S C
Sbjct:    5 GGSYGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCC 224          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.286e-69
Identity = 126/185 (68.11%), Postives = 154/185 (83.24%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGN 658
            + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GNKSDL+  RAV  ED +  A+KEGL FLETSALEA N+E AF T+LTEI++I++KK L A E   N
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSN 190          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.069e-68
Identity = 127/205 (61.95%), Postives = 159/205 (77.56%), Query Frame = 2
Query:   95 GDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPA 709
            G  + +  Y+FK+VLIGDS VGKS IL+RF RN FSLDSK+TIGVEF T++L ++ K++KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQSFD++ RWL ELR HAD +IVI+++GNKSDL   RAV  ++ K  A+KEGLFFLETSA+EA NVE AF T++TE++ IVN+K L A E      P    GK I +   A
Sbjct:    3 GRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSAA 207          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.069e-68
Identity = 120/188 (63.83%), Postives = 162/188 (86.17%), Query Frame = 2
Query:  101 PNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGN 664
            P+++ DY+FKVVLIGDS VGKS +L+RF RNEF L+SK+TIGVEF TRTL ++ ++VKAQIWDTAGQERYRA+TSAYYRGA+GA+LVYD+++  +F++++RWL+ELR HAD NIVI+LIGNK+DL+  RAV TEDA+ +A+KEGL F+ETSALEA NVE AF T+L+E++ I++KK++++ +   N N
Sbjct:    5 PDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANAN 192          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.529e-68
Identity = 134/222 (60.36%), Postives = 171/222 (77.03%), Query Frame = 2
Query:   86 GGYGDPNQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGE-GQGNGNPASLSGKKILVPGPAQEIPAKSSMCCRT 748
            GGY   ++  DY+FK+VLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF T+TL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++RR +F++  RWL+ELR H D NIV++LIGNKSDL    AVPTED K FA++E L+F+ETSALEATNVENAF  VLT+I+ IV+K+ + AG+ G  +G P+   G+ I V   +  +  K   CC T
Sbjct:    2 GGYRTDDE-YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPS--KGQTINVKEDSSVL--KRFGCCST 218          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.609e-68
Identity = 129/209 (61.72%), Postives = 164/209 (78.47%), Query Frame = 2
Query:  116 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGEGQGNGNPASLSGKKILVPGPAQEIPAKSSMCC 742
            DY+FKVVLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF TRTL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD++RR +F+++ RWL+EL++H D NIV++L+GNKSDL    AVPTED K +A++E L F+ETSALEATNVE+AF  VLT+I+ I +KK + AGE   +GN +   G+KI V      +  K   CC
Sbjct:   11 DYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGE---DGNASVPKGEKIEVKNDVSAL--KKLGCC 214          
BLAST of CK934050 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.027e-67
Identity = 132/202 (65.35%), Postives = 159/202 (78.71%), Query Frame = 2
Query:  104 NQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDISRRQSFDHITRWLEELRSHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAQKEGLFFLETSALEATNVENAFMTVLTEIFNIVNKKNLTAGE--------GQGNG-NPASLSG 682
            + + DY+FK+VLIGDS VGKS IL+RF RNEF L+SK+TIGVEF TRTL ++ K+VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYDI++RQ+FD++ RWL ELR HAD NIVI++ GNKSDL   RAV  +D    ++KEGL FLETSALEATN+E AF T+LTEI++IV+KK L A E        GQG   N A  SG
Sbjct:    6 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSG 207          
The following BLAST results are available for this feature:
BLAST of CK934050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_LOTJA4.556e-10887.05Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC3.610e-10587.10Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC8.891e-10486.18Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RGP1_ORYSJ6.609e-9177.27Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB2BV_BETVU9.286e-6968.11Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RGP2_ORYSJ2.069e-6861.95Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH2.069e-6863.83Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB11D_LOTJA3.529e-6860.36Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1B_ARATH4.609e-6861.72Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11C_LOTJA1.027e-6765.35Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934050 ID=CK934050; Name=CK934050; organism=Citrus sinensis; type=EST; length=847bp
GGGGGTTCAATATTGTGATTTGTGAAGTTGGTCGGTCTTGGTAAGCTCGA
TCTCTTACTAACTCTCAGTAGAAATGGCCAGCGGAGGAGGCTATGGAGAT
CCCAATCAGAAAATTGATTACGTATTCAAAGTTGTTTTAATCGGAGACTC
GGCCGTCGGCAAGTCTCAGATACTGGCAAGGTTTGCTCGAAACGAGTTCA
GTTTGGACTCTAAAGCCACCATTGGAGTTGAGTTTCAAACTAGGACTTTA
GTTATTCAACATAAGAGCGTCAAGGCACAGATCTGGGACACTGCTGGCCA
AGAACGATACAGGGCTGTCACAAGTGCATATTACAGAGGTGCTGTTGGGG
CAATGCTGGTTTACGACATTAGCAGACGCCAGAGCTTTGATCACATAACC
CGTTGGCTGGAAGAGTTGCGAAGCCATGCTGACAAGAATATTGTTATCAT
TCTCATTGGCAACAAAAGTGACCTTGAGGAGCAGCGGGCGGTTCCTACAG
AAGATGCCAAAGAATTTGCTCAGAAGGAAGGACTATTCTTCTTGGAGACC
TCAGCACTGGAAGCAACTAATGTGGAAAATGCTTTCATGACTGTGTTGAC
TGAGATTTTCAACATTGTAAACAAGAAGAATCTAACTGCTGGTGAAGGTC
AAGGCAATGGCAACCCTGCATCCCTTTCTGGCAAGAAGATTCTTGTTCCT
GGCCCAGCTCAAGAAATCCCTGCCAAGAGCAGCATGTGCTGTAGAACATG
ATGCAATTTGATATTACTCTCATATTGCACGAATCGGTTTTATGTAGTTA
ATAACATTTTTTTGAAAGGTGTTGTGCGTTTGGTGTGTATATTTTTC
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