CK934130

Overview
NameCK934130
Unique NameCK934130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7816 contig Csv1_Contig7816:224..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 52/173 (30.06%), Postives = 86/173 (49.71%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F+         L  +  +  +  + V    + W + L +  +L     Q+ ++ HD GH  V   PK+N +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWISTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHL 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-15
Identity = 57/184 (30.98%), Postives = 92/184 (50.00%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV           F++++  ++  ES+ W    + G+G         +L     Q+ ++ HD GH  V   PK+N +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV----------FFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHL 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.402e-15
Identity = 57/184 (30.98%), Postives = 91/184 (49.46%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I +D+R L        +F K  HV           F++++  ++  ES+ W    + G+G         +L     Q+ ++ HD GH  V   PK+N +
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNITKWSTQHPGGQRVIGHYAGEDATDAFRAFHPDLKFVGKFLKPLLIGELAPEEPSQDHGKNSKIIEDFRALKKTAEDMNLF-KTNHV----------FFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSVYRKPKWNHL 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_DANRE (Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 50/175 (28.57%), Postives = 84/175 (48.00%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEIS----------KDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAH-LGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ H K  D W+ ++ KVY+V++W K+HPGG   L + AG+D T+AF A+HP    Q + K      + + E SE S          +D+R L      +G F+ +    +  L  + L+  +    V    + W + L   ++L     Q+ ++ HD GH  V  +   N +
Sbjct:   24 EEVQKHTKHGDQWVVVERKVYNVSQWVKRHPGGLRILGHYAGEDATEAFTAFHPNL--QLVRKYLKPLLIGELEASEPSQDRQKNAALVEDFRALRERLEAEGCFKTQPLFFALHLGHILLLEAIAFMMVWYFGTGWINTLIVAVILATAQSQAGWLQHDFGHLSVFKTSGMNHL 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_XENLA (Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 51/184 (27.72%), Postives = 87/184 (47.28%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQDFEVSEISK------DYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-WA---HLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I+ KVY++++W K+HPGG   + + AG+D TDAF A+HP   +  ++L  L+ G   ++    +  K      D+R L        +F+                F+  ++ +L  E + W    +LG+G        +LL     Q+ ++ HD GH  V    K+N +
Sbjct:   26 EEIQKHNLKTDKWLVIERKVYNISQWVKRHPGGMRIIGHYAGEDATDAFHAFHPDKTFVRKFLKPLYIGELAENEPSQDRDKNAQQVEDFRALRKTAEDMRLFKSN-----------PAFFIFYLFHILLIEFLAWCTLHYLGTGWIPAIITVLLLTISQAQAGWLQHDFGHLSVFEKSKWNHL 198          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_BOVIN (Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 46/173 (26.59%), Postives = 83/173 (47.98%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQD------FEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVW-AHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY++T+W+ +HPGG   + + AG+D TDAF+A+H    +  +++  L  G    +       + S+I++D+R L        +F+  Q      L  +  M  +  + +    + W   + +  +L     Q+ ++ HD GH  V     +N I
Sbjct:   24 EEIQKHNLRTDKWLVIDRKVYNITKWSSRHPGGQRVIGHYAGEDATDAFLAFHRNLDFVRKFMKPLLIGELAPEEPSQDRGKNSQITEDFRALRKTAEDMNLFKSNQLFFLLHLAHIIAMESIAWFTLFYFGNGWIPTIITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHI 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS1_PAPAN (Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 50/178 (28.09%), Postives = 90/178 (50.56%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVS---EISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGV------LCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            +E+   +  E+ W+ I  KVYD++E+ ++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE +   E++ ++R L     + G+  K  HV       + L+ ++++ G       +   S    L   +LL    IQ+ ++ HD GH  V ++ K+N +
Sbjct:   23 DEVAQRSGCEERWLVIDRKVYDISEFTRRHPGGSRVISHYAGQDATDPFVAFHSNKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVEQMGLM-KANHV----FFLLYLLHILLLDGAAWLTLWIFGTSFLPFLLCAVLLTAAQIQAGWLQHDLGHLSVFSTSKWNHL 195          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS3_BOVIN (Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.335e-12
Identity = 46/175 (26.29%), Postives = 83/175 (47.43%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYFVQDF------EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWA-HLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKIAQ 500
            E++R HN   D W+ I+ +VYD++ WA++HPGG   + +   +D TDAF A+H   ++  ++L  L  G    +       + +++ +D+R L        +FE K       L  +  M V+    +      W     + ++L     QS  + HD GH  +  + ++N +AQ
Sbjct:   24 EQVRRHNLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNTQLIEDFRALRQAVEDMKLFEAKPAFFGLLLGHILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQHDLGHTSIFRNSRWNHLAQ 198          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS2_RAT (Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 54/191 (28.27%), Postives = 89/191 (46.60%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEV---------------SEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSG--------MLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            EE++ HN   D W+ I  KVY+VT+W+++HPGG   + + +G+D TDAF A+H       LD  F G F++   +               S+I++D+R L        +F K  H          L F +++  ++  ES+ W   ++ G+G         +L     Q+ ++ HD GH  V     +N I
Sbjct:   24 EEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVIGHYSGEDATDAFRAFH-------LDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTAEDMNLF-KTNH----------LFFFLLLSHIIVMESIAWFILSYFGNGWIPTVITAFVLATSQAQAGWLQHDYGHLSVYKKSIWNHI 196          
BLAST of CK934130 vs. ExPASy Swiss-Prot
Match: FADS1_HUMAN (Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.974e-12
Identity = 47/177 (26.55%), Postives = 87/177 (49.15%), Query Frame = 3
Query:    3 EELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYH--PGTAWQYLDKLFTGYFVQD---FEVS---EISKDYRRLYIEFAKQGMFEKKQ-----HVASCALTCVALMFVVVVYGVLCCESVWAHLGSGMLLGFLWIQSAYVGHDSGHYQVMTSPKFNKI 494
            +E+   +  E+ W+ I  KVY+++E+ ++HPGG   + + AGQD TD F+A+H   G   +Y++ L  G    +   FE +   E++ ++R L     + G+ +        ++    L   A    + V+G     S    L   +LL  +  Q+ ++ HD GH  V ++ K+N +
Sbjct:   23 DEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMGLMKANHVFFLLYLLHILLLDGAAWLTLWVFGT----SFLPFLLCAVLLSAVQAQAGWLQHDFGHLSVFSTSKWNHL 195          
The following BLAST results are available for this feature:
BLAST of CK934130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FADS2_PONAB3.753e-1530.06Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_HUMAN4.901e-1530.98Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FADS2_MACFA6.402e-1530.98Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
FADS2_DANRE5.419e-1428.57Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE... [more]
FADS2_XENLA1.577e-1327.72Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2... [more]
FADS2_BOVIN4.588e-1326.59Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=... [more]
FADS1_PAPAN7.825e-1328.09Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 P... [more]
FADS3_BOVIN1.335e-1226.29Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=... [more]
FADS2_RAT2.974e-1228.27Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fa... [more]
FADS1_HUMAN2.974e-1226.55Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934130 ID=CK934130; Name=CK934130; organism=Citrus sinensis; type=EST; length=510bp
CTGAAGAGCTTAGAACCCACAACAAGGCAGAAGATTTGTGGATCTCTATA
CAGGGGAAAGTTTACGACGTTACAGAATGGGCAAAACAACATCCTGGCGG
CGACGTTCCGCTCTTGAATTTGGCTGGCCAAGATGTAACCGATGCGTTTA
TAGCGTATCATCCAGGAACCGCTTGGCAATATCTTGATAAACTTTTTACA
GGCTATTTTGTTCAAGATTTCGAAGTATCTGAAATCTCAAAAGATTACAG
GAGACTGTACATTGAGTTTGCCAAACAGGGTATGTTTGAAAAGAAACAAC
ACGTGGCATCCTGTGCCCTTACATGTGTAGCATTGATGTTTGTTGTTGTG
GTTTATGGCGTTTTGTGCTGTGAGAGCGTCTGGGCTCATTTGGGTTCAGG
CATGTTGTTGGGGTTTCTTTGGATTCAAAGTGCTTATGTTGGTCACGATT
CCGGGCATTATCAGGTTATGACAAGTCCTAAGTTTAACAAAATTGCTCAG
CTTATTTCAG
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