CK934132

Overview
NameCK934132
Unique NameCK934132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2623 contig Csv1_Contig2623:359..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934132 vs. ExPASy Swiss-Prot
Match: MED10_AEDAE (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.109e-12
Identity = 28/71 (39.44%), Postives = 49/71 (69.01%), Query Frame = 3 
Query:    6 NIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 218
            ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL++TFP E+  Y+ IR +
Sbjct:   59 DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYKAIRGD 129
[Close]
BLAST of CK934132 vs. ExPASy Swiss-Prot
Match: MED10_ANOGA (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = 3 
Query:    6 NIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRAN 218
            ++ VP+EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L+ EL +TFP E+  Y+ IR +
Sbjct:   59 DVNVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYKAIRGD 129
The following BLAST results are available for this feature:
BLAST of CK934132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MED10_AEDAE2.109e-1239.44Mediator of RNA polymerase II transcription subuni... [more]
MED10_ANOGA4.699e-1239.44Mediator of RNA polymerase II transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004541_A02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934132 ID=CK934132; Name=CK934132; organism=Citrus sinensis; type=EST; length=627bp
GGGGCAATATTCAAGTGCCCATGGAAGTGCTTAATTTGATTGATGACGGA
AAAAATCCTGATGAATTCACAAGGGATGTTATAAACAGCTGCATTGCTAA
AAACCAAGTCACCAAAGGAAAAACTGATGCTTTCAAGAGTTTACGTAAGC
ATCTTTTGGACGAACTTGAGCAGACATTTCCGGATGAAGTTGAAGCATAT
AGAGAGATACGTGCAAATTCTGCTGCTGAAGTAAAGCGTCTTGCTCAATC
ACAAAGTATGTTGCCAAATGGAGATGTGAAAGTTAAATCTGAGCTTTAAA
TGTCCCATTTCATGCAGAGTGTTGGGGCTCTTTCGACTACTACTTTCTCA
ATGTAATGTCATGAGTCGTTCCAGTTCAGCAGCATTCAATGATTAAATCT
GAAAAAATTCGGTTTACTGTATACCATTAATGAAGCAATTTCATTTAGAA
TAAACCAATGGCCGGTAATACGTGCTTCAAATGCATTCCATTATGTTGTA
TACCCTGCTACATGATTTGTGATATTTACATGCTTTGAATGCATTCATAA
ACGTTGTATGCCCTGCTATATGATTTGTGATATAGGTTGATCTCCTTCAC
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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