CK934136

Overview
NameCK934136
Unique NameCK934136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934136 vs. ExPASy Swiss-Prot
Match: APO3_ARATH (APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.986e-76
Identity = 146/310 (47.10%), Postives = 196/310 (63.23%), Query Frame = 1
Query:    7 PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLA-SKEHSWKLGNVEHILPHVESFHLYDR-IGRAVSHNERLEVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSE--GIETFRFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEIQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDLKSGKPLVNELKRYYGMLPAVVGLFAQAGAKVSXDYTGLMR 924
            PP+NGLLV EL+ VAH V   R  LL+ ++++   + ++ C LC EVH+G   H+IRTC   GS + S  H WK G V  ++   + FHLYDR +   V H+ER  V +I AV ELCIQAG+D+ ++P++RR  P Y++ G+++DFE      D +SE     T        +  EE KS+       + ++   ME+W +M  G+ KLM++Y V TCGYCPEIQVGPKGH+VR C+A KHQMRDG HAWQEAT+DD+V P YVWHV+D   G  L N LKR+YG  PAV+ +  Q GA V   Y  +MR
Sbjct:   88 PPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFED---VNDGNSELAVTSTTTLIQEDDRCKEEKKSL-------KELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMR 387          
BLAST of CK934136 vs. ExPASy Swiss-Prot
Match: APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 4.184e-65
Identity = 119/309 (38.51%), Postives = 184/309 (59.55%), Query Frame = 1
Query:    7 PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKE-HSWKLGNVEHILPHVESFHLYDRIGRAVSHNERLEVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLA-GKVIDF-EKRFPKEDRSSEGIETFRFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEIQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDLKSGKPLVNELKRYYGMLPAVVGLFAQAGAKVSXDYTGLMR 924
            PP+NG++VK L+P+A+ V+ AR  L+  + R+ K + +  C  C E+HVG   H  ++C    +   K  H W    +E ++  +E++HL+DR+G+ + H+ER  + ++PAV ELCIQ G++IP++P +RR  P   +   + +D  E   P  +     +          +      +   + +E  ++A   ++ W +MR+G  KLM+ Y V+ CGYCPE+ VGP GH+ +NC A+KHQ R+GQH WQ A +DDL+PP YVWHV D+ +G P+  EL+ +YG  PAVV + AQAGA V   Y   MR
Sbjct:  123 PPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVDADETELPDPEPQPPPVPLL------TELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDV-NGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMR 424          
BLAST of CK934136 vs. ExPASy Swiss-Prot
Match: APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.464e-65
Identity = 129/316 (40.82%), Postives = 182/316 (57.59%), Query Frame = 1
Query:    7 PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCN-VAGSLASKEHSWKLGNVEHILPHVESFHLYDRIGRAVSHNERLEVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVID---FEKRFPKEDRSSE------GIETFRFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEIQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDLKSGKPLVNELKRYYGMLPAVVGLFAQAGAKVSXDYTGLMR 924
            PP+NGLLV  L+PVA  V      L+  + ++   + ++ CS CG VHV +  H IR CN    S     HSW  G +  +L  VES+H+YD  GR + H  R E ++IPA+ ELCIQAG++IP+YP RRR  P   +  +VID   + K   K   SS        ++T   +      + E         +   +A   M+ + K+R G++KLM+K+ V+ CGYC E+ VGP GH V+ C  +KHQ RDG+H WQ+A VD++ PP YVWHV+DLK G PL   L+R+YG  PA+V +   +GA+V   Y  +MR
Sbjct:  116 PPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPE---------DIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMR 421          
BLAST of CK934136 vs. ExPASy Swiss-Prot
Match: APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 6.084e-40
Identity = 96/300 (32.00%), Postives = 146/300 (48.67%), Query Frame = 1
Query:   28 VKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKE-HSWKLGNVEHILPHVESFHLYDRIGRAVSHNERLEVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFRFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEIQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDLKSGKPLVNELKRYYGMLPAVVGLFAQAGAKVSXDYTGLMR 924
            VKE++PVA ++  AR  L++ +  + K   + TC  C EV VG   H I TC       +   H W  G++  IL  VES+HL++     + H ER + D++PA+ ELC QAG   P+                               E ++      N + S E+ +S+   A + + V    +  W K+R+G+ KL+  Y  + C  C E+ VGP GH+ R C  +K++   G H W++A V+DLVP   VWH +  +    LV+E + YYG  PA+V L +  GA V   Y   M+
Sbjct:   55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-------------------------------EILQYSEIHDNPQISEEDIRSLP--AGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRP-QDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320          

HSP 2 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 36/124 (29.03%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  523 ENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEIQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDLKSGKPLVNELKRY-YGMLPAVVGLFAQAGA 891
            EN++ D    E   VA   +     + S I+ L++ + V TC +C E+ VG +GH +  C++Y  +  +  H W   +++D++ PV  +H+ ++  G  ++   +R+ Y  +PA++ L  QAGA
Sbjct:   47 ENRAKDYPVKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQG--VIRHQERFDYDRVPAILELCCQAGA 168          
The following BLAST results are available for this feature:
BLAST of CK934136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APO3_ARATH8.986e-7647.10APO protein 3, mitochondrial OS=Arabidopsis thalia... [more]
APO2_ARATH4.184e-6538.51APO protein 2, chloroplastic OS=Arabidopsis thalia... [more]
APO1_ARATH5.464e-6540.82APO protein 1, chloroplastic OS=Arabidopsis thalia... [more]
APO4_ARATH6.084e-4032.00APO protein 4, mitochondrial OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004541_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934136 ID=CK934136; Name=CK934136; organism=Citrus sinensis; type=EST; length=925bp
GGGGGGCCTCCTGAAAATGGATTACTGGTTAAGGAATTAATACCAGTTGC
TCATGATGTTTTTGCTGCCAGAACAGAATTGCTTGCTTGTGTTACGAGGG
TTGCCAAAAGCATTGCCATATATACATGCAGCTTGTGTGGAGAAGTTCAT
GTTGGTCATCCGCCACACAAGATTAGAACATGTAATGTTGCTGGTAGCCT
GGCAAGCAAAGAACACAGTTGGAAACTTGGGAATGTGGAACACATTTTGC
CTCATGTGGAATCCTTTCATCTATATGACAGGATAGGGAGAGCTGTTTCT
CATAATGAGCGGCTTGAAGTGGACCAAATTCCAGCTGTCAATGAATTGTG
CATCCAAGCAGGCATTGACATCCCCCAATACCCAACAAGGAGAAGAGTTT
TCCCAGCTTACAATCTTGCTGGTAAAGTTATAGATTTCGAGAAGAGGTTC
CCAAAAGAAGATAGATCTAGTGAAGGCATAGAAACATTTAGATTTTGGGG
GAATAGAAAGAAATCAAGTGAAGAGAACAAGTCTATAGATGTAAATGCTG
ATGAAGCACAAGCTGTTGCTGTTAGAGGTATGGAGACATGGGGGAAAATG
CGATCAGGAATATCCAAACTCATGCAGAAGTATGCTGTACAGACGTGTGG
GTACTGTCCAGAGATCCAAGTAGGACCTAAAGGTCACAGGGTGAGGAACT
GCCAAGCTTACAAGCACCAAATGAGGGATGGGCAACATGCATGGCAGGAG
GCAACAGTTGATGATTTGGTTCCTCCCGTGTATGTATGGCATGTACAAGA
TCTGAAGAGTGGCAAACCGCTGGTAAATGAATTAAAGAGATACTATGGGA
TGTTGCCTGCAGTTGTTGGACTATTTGCTCAGGCTGGTGCCAAAGTGAGT
TNNGATTACACCGGTCTAATGAGGG
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