CK934153

Overview
NameCK934153
Unique NameCK934153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934153_ssr36 microsatellite CK934153_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5720 contig Csv1_Contig5720:38..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934153 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.742e-92
Identity = 173/239 (72.38%), Postives = 199/239 (83.26%), Query Frame = 2 
Query:   74 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDAKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEIQDEEMVEVKSLDVRNF 790
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EE QDEEM +VKSLD+RNF
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNF 239
The following BLAST results are available for this feature:
BLAST of CK934153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH4.742e-9272.38Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004540_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934153 ID=CK934153; Name=CK934153; organism=Citrus sinensis; type=EST; length=865bp
GGGGGAACCCTAAACACTCTAAAAGCAGAAACCTCGAAGAAGAAGAACAA
CAGCTGAGGTTCTGATTCCGATCATGGCATTTGCTTCTCGCCTCGCATCC
AAATCCAAACAGCTGTGTAGTAGTCAAGTGATACTGCAACGGCAGCATGC
AATTTCAGTTCGTTTCTTTGCAAACGAAGCTGCTCCTCAGGCTCTTAAAG
GAGATGAGATGTTGAAAAACATCTTTTTGGATGCTAAGAAGAAATTTGAG
ACTGCCTTGGGGGTACTCCGGAAGGAGAAGATCACCATTGCTCCAGAGGA
TCCTGCTGCTGTTTCTCAGTATGCTAATGTCATGAAGACTGTCAGAGAGA
AGGCAGACTTGTTCTCAGAATCCCAACGAATAGCGTATACCATTGAAACA
CGAACAGCAGGAATTCCAGATGCTCGAACATATTTGTTGACGCTCAAGGA
AATAAGGGAGAGGAGAGGTCTCATTGATGAGCATGGTGCTGAGGCTATGA
TGATGGATGCATTGGAGAAAGTTGAAAAAGAAATTAAAAAGCCTCTTATG
AGGAATGATAAGAAGGGGATGGCTCTTCTTACAGCTGAGTTTGACAAGAT
TAATAAGAAGCTTGGGATCCGAAAGGAGGATCTACCAAAGTATGAAGAAC
AGTTGGAACTCAAAATTGCCAAAGCACAGTTGGAAGAATTGAAGAAGGAT
GCTCTTGAGGCCATGGAAACACAAAAGAAGAGAGAGGAAATTCAGGATGA
GGAAATGGTCGAAGTGAAGTCCTTGGATGTCAGAAACTTCTTTTGAGTCT
CTGCATTTACTTTTTACGGTTTTTGAGCATAATGGAAATCAGCAACTTGG
AATGTGGAAATACCA
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