CK934265

Overview
NameCK934265
Unique NameCK934265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.594e-59
Identity = 117/168 (69.64%), Postives = 144/168 (85.71%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLFE  SSSMK+++ R+N+ S N+ KL+ PSLELQL ENS +  +S+EIADKS +LRQMRGE+L GL IEELQ LE  LE GL+RV++TK D+IM+EIS L++KG +L++ENK L+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLR 168          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.350e-58
Identity = 117/168 (69.64%), Postives = 142/168 (84.52%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQL-ENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            MAREKI+I+KIDN TARQVTFSKRRRGLFKKAEELSVLCDA+V +IIFS+TGKLF+ SSSSMK I+ R ++HS N+ KL+ PSLELQL ENS Y  LS+EI++KS +LRQMRGE+L GL IEELQ LE  LE GLSRV++ KGD+IM EI+ L++KG  L+EEN+ L+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLR 168          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.769e-50
Identity = 99/167 (59.28%), Postives = 131/167 (78.44%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            MARE+ +I++I++  ARQVTFSKRRRGLFKKAEELSVLCDA+V +I+FS+TGKL   +SSSM +II +YN HS+N+ K   PSL+L LE+SKY  L+ ++A+ S +LRQMRGE+L GL+I+ELQ LE  LE GL RV+ TK  + M +IS L+RK ++L EEN  L+
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLR 167          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.684e-48
Identity = 99/166 (59.64%), Postives = 127/166 (76.51%), Query Frame = 1
Query:  187 REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLS-LSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            RE+I IR+IDN+ ARQVTFSKRRRGLFKKAEELS+LCDAEVG+++FSATGKLF+ +S+SM+ II RYN HS  + +     L+LQ E+S   + L  E+A+ S +LRQMRGE+LH L +E+LQ LE  LE GL  VL+TK  +I++EI  LERK  +L+EEN  LK
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLK 187          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.504e-45
Identity = 99/190 (52.11%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLN-HPSLE----------------------LQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            MARE+ +IR+I++  ARQVTFSKRRRGLFKKAEEL+VLCDA+V +++FS+TGKL + +SS+M +II +Y  HS N+ K +  PS++                      LQLE+SK  SL+ ++A+ S QLRQMRGE+L GL++EELQ +E  LE GL RVL TK  + M EIS L+RKG +L EEN  L+
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLR 190          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 80/166 (48.19%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R KI IR+IDN T+RQVTFSKRR G+FKKA+EL++LCDAEVG++IFS+TG+L+E SS+SMK +I RY         + +P+ EL+    +  SL +++ +     RQ+ GEDL GL ++ELQ LE  LE  L  V   K   +++EI  L RKG+ + +EN  L
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMEL 166          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.458e-33
Identity = 73/155 (47.10%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 645
            M R KI+I++IDN T+RQVTFSKRR GLFKKA ELS+LCDAEVG+++FS+T +L++ +SSSMK II RYN    +  +  + S E +L   +  SL +++ +     RQ+ G+ L GL +E+LQ+LE+ LE  L  +   K + +M++I  L RK
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMNASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.834e-32
Identity = 75/166 (45.18%), Postives = 107/166 (64.46%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R KI I++ID+ T+RQVTFSKRR+GL KKA+EL++LCDAEVG+IIFS+TGKL++ +SSSMK +I RYN       +L +P+ E++    +   L +E+       RQM GE L+GL++ EL  LE  +E  L  +   K   +  EI  L +K   + +EN +L
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDL 166          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R KI IR+IDN T+RQVTFSKRR GL KKA+ELS+LCDAEVG+++FS+TG+L+E SS++MK +I RY      +   N  S E+++   +  SL +++ +     +Q+ GE+L GL + +LQ LE  LE  L  +   K + + +EI  L  KG+ + +EN  L
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEELLGGNATS-EIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIEL 165          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 69/167 (41.32%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            M R KI I++IDN   RQVTFSKRR GL KKA EL++LCDA+VG+I+FS TG+L++ SSSSMK II RY        +L +P  E +    +  +L +++ +     RQ+ GE++   T+ +LQ L+  +E  L  +   K   +  EI  L  KG+ + +EN  L+
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELR 167          
The following BLAST results are available for this feature:
BLAST of CK934265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SVP_ARATH1.594e-5969.64MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
JOIN_SOLLC1.350e-5869.64MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MAD22_ORYSJ8.769e-5059.28MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD47_ORYSJ3.684e-4859.64MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD55_ORYSJ6.504e-4552.11MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD27_ORYSJ7.207e-3648.19MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD23_ORYSJ7.458e-3347.10MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL21_ARATH4.834e-3245.18Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD57_ORYSJ3.133e-3144.58MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD25_ORYSJ2.653e-3041.32MADS-box transcription factor 25 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934265 ID=CK934265; Name=CK934265; organism=Citrus sinensis; type=EST; length=681bp
GCGGGGAAAAATAAAGAAAAAGAAATTGAANNNACTGTTTTGCTATAAAA
GGGAAGGCAACCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCC
GTCTCTATTTCTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGA
TCAGTCCTGAACCAGGCCTCCTATTAGATTATGGCGAGAGAGAAGATCAA
GATCAGGAAGATTGATAACATAACAGCGAGACAAGTGACTTTCTCAAAGA
GAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTTTCTGTTCTTTGTGAT
GCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGGCAAGCTCTTTGAGTC
CTCCAGCTCCAGCATGAAGGACATAATTGCAAGGTACAACATGCATTCAA
GTAACATCAGCAAATTGAATCATCCATCTCTTGAACTGCAGTTGGAGAAT
AGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGATAAGAGCCGTCAACT
AAGGCAGATGAGAGGAGAGGATCTTCATGGATTGACTATTGAGGAACTCC
AGCACCTTGAAACAATGCTTGAACAGGGACTTAGCCGTGTGCTCCAGACA
AAGGGTGACCGGATTATGAATGAGATCTCTACACTTGAAAGGAAGGGAGC
TAAGCTGCTGGAGGAGAACAAGAATCTAAAG
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