CK934288

Overview
NameCK934288
Unique NameCK934288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1669 contig Csv1_Contig1669:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.541e-72
Identity = 128/195 (65.64%), Postives = 152/195 (77.95%), Query Frame = 2
Query:  161 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            G  + +NL+ AIN  + IA++ D +A             RCT GL D++G SRVFNTPLCEQGI GFAIGLAA G   IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+PYGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR +VEEVP  DY +PL
Sbjct:   44 GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYRSAVEEVPIGDYEIPL 238          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 4.735e-71
Identity = 129/195 (66.15%), Postives = 147/195 (75.38%), Query Frame = 2
Query:  161 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PL
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPL 258          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.735e-71
Identity = 129/195 (66.15%), Postives = 147/195 (75.38%), Query Frame = 2
Query:  161 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            G  + +NL+ +I  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+RAP+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PL
Sbjct:   64 GQTQKMNLFQSITSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPL 258          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.055e-70
Identity = 127/195 (65.13%), Postives = 147/195 (75.38%), Query Frame = 2
Query:  161 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            G  + +NL+ A+  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVV+PRSP QAKGLLLSCI D NP +FFEPK LYR +VE+VP + Y +PL
Sbjct:   66 GQTQKMNLFQAVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPL 260          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.069e-70
Identity = 127/195 (65.13%), Postives = 146/195 (74.87%), Query Frame = 2
Query:  161 GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            G  + +NL+ ++  AL  +L  DP A             RCT GL D++GK RVFNTPLCEQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P+G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR + EEVP + Y +PL
Sbjct:   66 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPL 260          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.272e-46
Identity = 100/191 (52.36%), Postives = 120/191 (62.83%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY LP+
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPI 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.463e-45
Identity = 99/191 (51.83%), Postives = 119/191 (62.30%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTT-GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            + +  A+N+AL   +  DPR                 T GL  ++G  RV +TPL E  IVG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF    L VR P G    GGH+HSQSPEA F H  GLKVV   +P  AKGLL + IRD +PVVF EPK LYR   EEVPE+DY L +
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKEEVPEEDYTLSI 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.778e-44
Identity = 94/191 (49.21%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  176 LNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPL 745
            ++   AIN A+   +E D R +             + T GL ++FG+ RV +TPL E  I G  IG A  G R IAE+QFAD+I PA +QI++EAAK RYRS N ++C  + VRAPYG   HG  YHSQS EA F + PGLK+V+P +P  AKGLL + +RD +PV+FFE K  YRL   EVP DDY+LP+
Sbjct:    4 MSYIDAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCP-IVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRLIKGEVPADDYVLPI 193          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.816e-38
Identity = 82/176 (46.59%), Postives = 110/176 (62.50%), Query Frame = 2
Query:  173 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 697
            S+ +  A+  A+ I LE D                 RCT GL  ++G SRVF+ P+ E GI+G A+G+ A G R + EIQFADY++PA DQ+++EAA+ RYRS   F    +TVR P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++CI + +PV+F EPK LY
Sbjct:   16 SMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDF-IVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLY 190          
BLAST of CK934288 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.622e-37
Identity = 82/176 (46.59%), Postives = 108/176 (61.36%), Query Frame = 2
Query:  173 SLNLYSAINQALHIALETDPRAYXXXXXXXXXXXX-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 697
            ++ +  A+  A+ + LE D                 RCT GL  ++GKSRVF+ P+ E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F    LT+R P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY
Sbjct:    5 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLY 179          
The following BLAST results are available for this feature:
BLAST of CK934288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_DICDI9.541e-7265.642-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT4.735e-7166.152-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE4.735e-7166.152-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN1.055e-7065.132-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN3.069e-7065.132-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_THET85.272e-4652.362-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET24.463e-4551.832-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU3.778e-4449.212-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_PSEAE1.816e-3846.592-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEPU2.622e-3746.592-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934288 ID=CK934288; Name=CK934288; organism=Citrus sinensis; type=EST; length=746bp
GGGGGAATTCAATATTTGCAAACTCCACAACCAAAAATCTTGGCGGAGAT
TTCACTATATGGCTTCTGGTTTGAGAAGATTTGTGGGTTCCCTTTCACGG
AGAAATCTTTCAACTGCTTGTGCGAACAAGCAGCTAATTCAACAACACGA
TGGGGGTGTTGGCAGTGGCAAGTCTTTGAATTTGTACTCTGCCATCAACC
AGGCTCTTCATATTGCTTTGGAAACTGATCCACGTGCTTATGTGTTTGGA
GAAGATGTGGGCTTTGGTGGAGTCTTCCGATGCACGACAGGATTAGCTGA
TCGATTTGGTAAAAGTCGGGTATTCAATACCCCTCTTTGTGAACAGGGCA
TCGTTGGGTTTGCCATTGGTCTGGCAGCTATGGGAAATCGAGCTATAGCT
GAAATTCAATTTGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAA
TGAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAG
GATTAACAGTAAGAGCCCCTTACGGAGCTGTGGGCCATGGTGGACACTAT
CACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGT
GGTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCA
TTCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGT
TTGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTAT
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