CK934305

Overview
NameCK934305
Unique NameCK934305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7125 contig Csv1_Contig7125:41..856. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CK934305 vs. ExPASy Swiss-Prot
Match: KRP1_ARATH (Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis thaliana GN=KRP1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 56/182 (30.77%), Postives = 84/182 (46.15%), Query Frame = 3 
Query:  168 ASYIQLRNRTID--TGEKTTTENRCSSPGLELSDHDRVXXXXXXXXXXXERIEFVDLKDESADVEAETSTYYGCRERRXXXXXXXXXXXXXXXXXXXXXT-----AKPSSEANSRRRSTVEN---------------MPAKSEIEDFFAEAEKKLVKQFSQKYNFDFVKEEPMEGRYKWVGL 647
            ++Y+QLR+R I     EK+++ +     G+  S                ++ E + L++E  D + ETSTY    +R+                     +      K S +     R T+E                MP +SEIEDFF EAEK+L ++F +KYNFDF KE+P+EGRY+WV L
Sbjct:   18 STYMQLRSRRIVYVRSEKSSSVSVVGDNGVSSS---------CSGSNEYKKKELIHLEEEDKDGDTETSTYRRGTKRKLFENLREEEKEELSKSMENYSSEFESAVKESLDCCCSGRKTMEETVTAEEEEKAKLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKL 190
[Close]
BLAST of CK934305 vs. ExPASy Swiss-Prot
Match: KRP6_ARATH (Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis thaliana GN=KRP6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.286e-11
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 3 
Query:  324 VDLKDESADVEAETSTYYGCRERRXXXXXXXXXXXXXXXXXXXXXTAKPSSEANSRRRSTVENMPAKSEIEDFFAEAEKK--LVKQFSQKYNFDFVKEEPMEGRYKW 638
            VDL+D   + E ETST+     R+                     T   SS A  R++  V   P  +EIED F+E E +    KQF +KYNFD V +EP+EGRYKW
Sbjct:   95 VDLEDHQIETETETSTFITSNFRKETSPVSEGLGETT--------TEMESSSATKRKQPGVRKTPTAAEIEDLFSELESQDDKKKQFIEKYNFDIVNDEPLEGRYKW 193
The following BLAST results are available for this feature:
BLAST of CK934305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KRP1_ARATH5.222e-1330.77Cyclin-dependent kinase inhibitor 1 OS=Arabidopsis... [more]
KRP6_ARATH1.286e-1138.32Cyclin-dependent kinase inhibitor 6 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004260_G08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934305 ID=CK934305; Name=CK934305; organism=Citrus sinensis; type=EST; length=816bp
GGGGGAGAAAGTTGAGGGCTCAAGGGCTTACAGAAATTCCAGTGATGGAG
GTCGCTCGAGTTGGCGTAAGAACGCGAACGCGAGCACGAGCTGAAGCCCT
GGCGGCTGCAACTTCTTCCAAGTTAGCTAAGAGAAGGAAACTAGAGTGTG
ATGAAGTCAAAAGCTTTGCGTCTTATATTCAGCTCAGGAATCGTACAATT
GATACAGGTGAGAAAACGACGACGGAGAATCGGTGTTCAAGTCCTGGCTT
AGAATTATCTGATCATGATCGTGTTTCGACTTCATGTTGCTCCAGTCACG
GATCCAGTGAGAGAATAGAATTTGTAGATCTGAAGGATGAGAGTGCTGAT
GTGGAAGCTGAAACATCGACGTATTATGGATGCAGAGAAAGGAGAGACGC
GACGCTGTCCAGCGAGCTTGAAGCTGAAGCTGGAGAAGAATCAGACAGCC
TGGATTCAACTGCGAAGCCATCATCAGAGGCAAACTCTCGCCGTAGATCA
ACGGTGGAGAACATGCCTGCCAAGTCTGAAATTGAGGACTTCTTCGCTGA
AGCTGAGAAAAAGCTCGTAAAACAATTTTCTCAGAAGTATAACTTCGACT
TCGTGAAAGAGGAGCCAATGGAAGGACGTTACAAGTGGGTAGGGTTGAGG
CCATGAAGAAGATTACCAATGAAGAAATTAAATTAAAAACAATGGCGATA
TCTTCTGCAGATATACGTATTGTACTTCTAGGTATCAGTGATTGATGATT
TAGTTTCTGTTGTTTAGTGTAAGGTGTGTTTCGTATTTTTTGTACAGCTC
GTCAGCNNTACTGGAA
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