CK934310

Overview
NameCK934310
Unique NameCK934310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934310_ssr258 microsatellite CK934310_ssr258:258..269. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934310 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.246e-25
Identity = 50/75 (66.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:  280 MTIKPVVRIAERKLIVKDRTVLTGVPDNLITTSGSTSGPVEGVFIGAAFDEENSRHVLPIGALRDVRFLACFRFK 504
            MTIKP VRI++  LI+K+RT+LTGVPDN+ITTS S +GPVEGVF+GA F++E S+H++PIG LR+ RF++CFRFK
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFK 75
[Close]
BLAST of CK934310 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  280 MTIKPVVRIAERKLIVKDRTVLTGVPDNLITTSGSTSGPVEGVFIGAAFDEENSRHVLPIGALRDVRFLACFRFK 504
            MTI   + +    L+V+ +T+LT +PDN+I T  + +G V G FIGA F++  S HV PIG L  +RF+ CFRFK
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFK 75
The following BLAST results are available for this feature:
BLAST of CK934310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RFS6_ARATH5.246e-2566.67Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH9.282e-1446.67Probable galactinol--sucrose galactosyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004260_F05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934310 ID=CK934310; Name=CK934310; organism=Citrus sinensis; type=EST; length=506bp
TTTTTTTTTTTTCTAATTTCTCCAATCCTTTCATTTCTGAAGAAACTTTT
TATTTCTGCCAGTTTCTAACAAGCTCTTGTTTATTGGCTTCATGCCTTCG
AATTCGCAGATATTCTTCCAATCCTTCATTCTCGGTCTTCTCTTTTAAGG
TAATTAAATTGTTCAACTCATTTTGCTTGTTAAGTCTTTTTATGTATGTT
AATTTTCTTCTTGGAGTTTCAGAGAGACGAGCTAATTACACCTCGAAAGA
AGCTTCGAGAAGAAGAAGAAGTTAAAGAGATGACGATCAAACCAGTAGTT
AGGATCGCCGAGAGGAAGCTAATTGTAAAGGATCGTACGGTCCTTACCGG
AGTGCCGGACAATTTGATCACGACGTCCGGTTCGACTTCCGGTCCCGTCG
AGGGAGTCTTCATTGGCGCGGCTTTCGATGAAGAAAACAGCAGGCACGTG
CTCCCCATCGGGGCTTTGCGTGACGTTCGTTTCTTGGCCTGTTTCAGGTT
CAAGTT
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