CK934313

Overview
NameCK934313
Unique NameCK934313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934313_ssr671 microsatellite CK934313_ssr671:671..682. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10230 contig Csv1_Contig10230:1140..1957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_HUMAN (Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 67/175 (38.29%), Postives = 100/175 (57.14%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  +++ ++G  AK +  T GE+ +RG C+MLGY  +P  T + +  D W++TGDV  M+  G+ +I  RSKD+II                  P V E  VV   D+  GE  CA + LK+G ++  T +E+  +C+GK+ H+ +PK +VF+   P T +GKIQKF LRE  E
Sbjct:  440 TEARIMNMEAGTLAKLN--TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEET--TVEEIKAFCKGKISHFKIPKYIVFVTNYPLTISGKIQKFKLREQME 610          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.554e-28
Identity = 69/175 (39.43%), Postives = 96/175 (54.86%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  V+DP +G          GE+++RG C+ML Y +D   TR+C+T D W+ TGD+  +    Y +I+ R KD+II                  P + EA VV   DE  GE  CA + LKEG +   T +E+  YC+GK+ HY VP+ ++F+ + P T TGKIQK  LRE  E
Sbjct:  431 TEAKVVDPTTGEIVPLGAQ--GELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRLKEGQEC--TVEEIKAYCKGKIAHYKVPRYILFVQDYPLTITGKIQKHKLRERTE 601          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: YNGI_BACSU (Putative acyl-CoA synthetase yngI OS=Bacillus subtilis GN=yngI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.865e-28
Identity = 66/172 (38.37%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLRE 653
            TEV +++P +    +R     GE+  RG  +M GY KD   TRK +  DGW +TGD+ VM  DGY  I  R KD++I                  PAV +  VV  PD  +GE   A++ LK+G    P   E+  YC+GK+  + +P+ V+F D+ P T++GKIQK+ LRE
Sbjct:  370 TEVKIVEPGTCQEVQR--GMQGELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKLKDGKSVSP--DELKAYCKGKIARHKIPRYVIFTDDYPMTASGKIQKYKLRE 537          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_MACFA (Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.683e-27
Identity = 65/175 (37.14%), Postives = 101/175 (57.71%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  +++ ++G+ A+ +  T GE+ +RG C+MLGY  +P  T + +  D W+ TGD+  M+  G+ +I  RSKD+II                  P V E  VV   D+  GE  CA + LK+G ++  T +EM  +C+GK+ H+ +P+ +VF+   P T++GKIQKF LRE  E
Sbjct:  443 TEARIMNMEAGMLAELN--TPGELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEET--TAEEMKAFCKGKISHFKIPRYIVFVTNYPLTTSGKIQKFKLREQME 613          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.749e-27
Identity = 65/175 (37.14%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  +++ ++G   + +  T GE+ +RG C+MLGY  +P  T + +  D W+ TGD+ +M   G+ +I  RSKD+II                  P V E  VV   D+  GE  CA + LKEG K+  T +E+  +C+GK+ H+ +P+ +VF+   P T +GKIQKF LRE  E
Sbjct:  440 TEAQIVNTETGTLTELN--TPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRLKEGEKT--TAEEIKAFCKGKISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQME 610          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_PONAB (Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27
Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  +++ ++G  A+ +  T GE+ +RG C+MLGY  +P  T + +  D W+ TGDV  M+  G+ +I  RSKD+II                  P V E  VV   D+  GE  CA + LK+G ++  T +E+  +C+GK+ H+ +P+ +VF+   P T +GKIQKF LRE  E
Sbjct:  440 TEARIMNMEAGTLAELN--TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEET--TVEEIKAFCKGKISHFKIPRYIVFVTNYPLTISGKIQKFKLREQME 610          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.070e-26
Identity = 75/221 (33.94%), Postives = 115/221 (52.04%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAENM 668
            GYG+TE+G +  S A+ +N            + + G   T +   E+ V+D ++G+S  R+ S  GEI +RG  +M GYL DP  T + +  DGW +TGD+G +  D  + I DR K++I                   P++++AAVVA  DE   E P AFV+  +GS+   TE ++  Y   ++ HY   K V F++ +PK  +GKI +  LR   E M
Sbjct:  361 GYGMTESGTVAKSLAFAKN----------PFKTKSGACGTVIRNAEMKVVDTETGISLPRNKS--GEICVRGHQLMKGYLNDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQL--TEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKLETM 567          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: ACSF2_RAT (Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  138 TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLREIAE 662
            TE  +++ ++G   K +    GE+ +RG C+M GY  +P  T + +  D W+ TGD+  M   G+  I  RSKD+II                  P V EA VV   D+  GE  CA + LK G  +  TE+E+  +C+GK+ H+ +P+ +VF++  P T +GKIQKF LRE  E
Sbjct:  440 TEAQIVNMETGELTKLNMP--GELCIRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKSGETT--TEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKIQKFKLREQME 610          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.985e-25
Identity = 72/213 (33.80%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTALTEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C       L  A E  K+++          E+ ++DP +G S  R+ S  GEI +RG  IM GYL DP  T+  + +DGW +TGD+G +  D  + I DR K++I                   P + +AAVV+  D+  GE P AF+   EGS+   TE E+ ++   ++  Y     V F D +PK  +GKI +  LR
Sbjct:  331 GYGMTEAGPVLAMC-------LAFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQS--GEICIRGEQIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEI--TEDEIKKFVAKEVVFYKRINKVFFTDSIPKNPSGKILRKDLR 532          
BLAST of CK934313 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.021e-24
Identity = 76/215 (35.35%), Postives = 107/215 (49.77%), Query Frame = 3
Query:   12 GYGLTETGGIVVSCAWKRNWNLLPAAEKAKLRARQGVKTTAL--TEVDVLDPKSGVSAKRDGSTLGEIVLRGGCIMLGYLKDPIGTRKCMTDDGWFYTGDVGVMHSDGYLEIKDRSKDVIIXXXXXXXXXXXXXXXXXXPAVNEAAVVARPDEFWGETPCAFVSLKEGSKSKPTEKEMIEYCRGKLPHYMVPKTVVFMDELPKTSTGKIQKFVLR 650
            GYG+TE G ++  C          A  K     + G   T +   E+ ++DPK+G S  R+ S  GEI +RG  IM GYL DP  T + +  +GW YTGD+G +  D  L I DR K++I                   P +++AAVV   DE  GE P AFV    GS    TE E+ ++   ++  Y   K V F+D +PK+ +GKI +  LR
Sbjct:  332 GYGMTEAGPVLAMCL---------AFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQS--GEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTI--TEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLR 533          
The following BLAST results are available for this feature:
BLAST of CK934313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ACSF2_HUMAN4.428e-2838.29Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_DANRE7.554e-2839.43Acyl-CoA synthetase family member 2, mitochondrial... [more]
YNGI_BACSU9.865e-2838.37Putative acyl-CoA synthetase yngI OS=Bacillus subt... [more]
ACSF2_MACFA1.683e-2737.14Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_BOVIN3.749e-2737.14Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSF2_PONAB8.352e-2737.14Acyl-CoA synthetase family member 2, mitochondrial... [more]
4CL4_ARATH7.070e-2633.944-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
ACSF2_RAT5.985e-2536.57Acyl-CoA synthetase family member 2, mitochondrial... [more]
4CL3_ORYSJ5.985e-2533.80Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL2_TOBAC1.021e-2435.354-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_F09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934313 ID=CK934313; Name=CK934313; organism=Citrus sinensis; type=EST; length=818bp
GGGGGAGTCACGGATATGGGTTGACCGAAACGGGAGGAATCGTGGTGTCG
TGTGCATGGAAAAGGAACTGGAACCTGTTGCCAGCAGCGGAGAAAGCTAA
GCTTAGGGCTAGACAAGGAGTCAAAACGACAGCGTTGACGGAAGTTGACG
TGCTGGATCCGAAGTCGGGAGTGAGTGCAAAACGTGACGGGTCAACGCTG
GGTGAGATTGTACTGAGAGGAGGATGCATAATGCTGGGTTATCTTAAAGA
TCCTATTGGGACCCGTAAGTGCATGACGGATGATGGCTGGTTCTACACCG
GAGACGTTGGGGTGATGCACAGTGATGGGTACTTAGAGATAAAGGATAGA
TCAAAGGATGTTATAATCAGCGGGGGAGAGAACCTGAGCAGCGTGGAGGT
TGAGTCAGTGCTGTATTCGAACCCGGCAGTTAACGAGGCGGCAGTGGTGG
CTCGGCCGGACGAGTTCTGGGGCGAGACGCCTTGTGCATTTGTCAGTTTG
AAGGAGGGGTCGAAAAGTAAACCAACCGAAAAAGAGATGATAGAGTATTG
CAGGGGTAAGTTGCCCCACTACATGGTGCCCAAAACTGTGGTGTTTATGG
ATGAATTGCCCAAGACTTCTACCGGTAAGATTCAAAAGTTTGTGCTCAGA
GAGATTGCTGAGAACATGGGCTCCTCCTCCTCGCCTCTCTCCAGATCATT
GACCAGTCGAATGTAGTAATATTAAACTCGAATCGATCGACGAACTGNCA
GTTAGCATTATTTGCTCCTCCAATAAAATTNNNNNTCCAATCGTAATTAA
AAAAAAAAAAAAAAAAAA
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