CK934346

Overview
NameCK934346
Unique NameCK934346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:61..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.532e-43
Identity = 89/121 (73.55%), Postives = 95/121 (78.51%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            M +K  K RKEEVV+REYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNK +WS                  ND+EDAKEE YSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct:    1 MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.297e-42
Identity = 86/115 (74.78%), Postives = 93/115 (80.87%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            KGRKEEV+TREYTINLH+RLH CTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EED
Sbjct:    5 KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.693e-42
Identity = 86/121 (71.07%), Postives = 95/121 (78.51%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            MVEK GK R+ EV TREYTINLH+RLHGCTFKK APKA+KEIRKFAQKAMGTTDVR+DVKLNK VWS                  NDEEDAK+E YS+VTVAE+PPEGL GLGTK+I+EED
Sbjct:    1 MVEK-GKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.212e-42
Identity = 86/115 (74.78%), Postives = 92/115 (80.00%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            KGRKEEVVTREYTINLHKRLH CTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVAEIP +GLKGLGTK+I++ED
Sbjct:    6 KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.888e-42
Identity = 85/115 (73.91%), Postives = 92/115 (80.00%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            KGRKEEVVTREYTINLH+RLH CTFKKKAPKAIKEIRKFA+K MGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTK+I+EED
Sbjct:    5 KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.772e-42
Identity = 86/116 (74.14%), Postives = 92/116 (79.31%), Query Frame = 3
Query:   78 GKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            GKGRKEEVVTREYTINLH+RLH CTFKKKAP AIKEIRKFA KAMGT DVRVDVKLNKQ+WS                  ND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EE+
Sbjct:    4 GKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.171e-41
Identity = 87/121 (71.90%), Postives = 94/121 (77.69%), Query Frame = 3
Query:   63 MVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 425
            MVEK  KGRKEEVVTREYTINLHKRLHGCTFKKKAP AIKEIRKFAQKAMGT DVRVDVKLNKQ+WS                  ND+EDAKEE YSLVTVA+IP   LKGLG ++I+E+D
Sbjct:    1 MVEKT-KGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 422
            K R  E+VTREYTINLHKRLHG  FKK+AP+A+KEI+KFA K MGTTDVRVD +LNK VW+                  ND+EDAKE+ Y+LVT   +P    KGL T+ +D E
Sbjct:    8 KSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQNVDAE 119          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 65/113 (57.52%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   81 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 419
            K R +E VTREYTI+L KRLH  +FKK APKA+KEIRKFA K MGT+DVR+DVKLNK VWS                  ND+EDAKEE YS VTVAE   +  KG GT V+ +
Sbjct:    5 KSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115          
BLAST of CK934346 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   69 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 416
            E+ GK    EVVTREYT+NLHKRLHG  FKK+AP+AIKEIRKFA+K MGT DVRVD +LNK +WS                  ND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:    7 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
The following BLAST results are available for this feature:
BLAST of CK934346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PERFR1.532e-4373.5560S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL313_ARATH1.297e-4274.7860S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PICMA1.693e-4271.0760S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_NICGU2.212e-4274.7860S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL312_ARATH2.888e-4273.9160S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL311_ARATH3.772e-4274.1460S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PANGI4.171e-4171.9060S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_CYAPA2.010e-2755.2660S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_CHLRE5.847e-2757.5260S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_SPOFR6.465e-2651.7260S ribosomal protein L31 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004260_B07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934346 ID=CK934346; Name=CK934346; organism=Citrus sinensis; type=EST; length=670bp
GGGGAGCAGCCGCAGACGCAGAGTGTAGAAGCTCGAGAGCAGAAAAAGAA
GAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAAAAGAAGAGGT
CGTCACTCGCGAATATACCATTAATCTCCACAAACGCTTGCATGGCTGCA
CCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGGAAGTTTGCT
CAAAAAGCCATGGGGACAACTGATGTTAGGGTGGATGTGAAGCTCAACAA
GCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAATTCGTGTTC
GTGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAAGAGTTCTAC
TCTCTCGTCACTGTTGCCGAGATCCCTCCAGAAGGACTCAAGGGGCTGGG
CACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTGTTTAGCTAA
GGAACTCCAAATTTTGGCTATAATTTTATCTTATTTAGTTGCTTTTTTGG
TTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGGTTTCGTGAA
CGTATTGTGATTTATGCATTTACCCTGTTTAAGAAAAAAAAAAAAAAAGC
AAAAAGACAAAAAAAAAAACAAAAACCCAAAAAAAANNNNNNCCAAAAAA
NNNNAAAAAAAAAAAAAAAA
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